YRC Public Data Repository - Protein Structure Prediction

Protein:	obr1
Organism:	Schizosaccharomyces pombe
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for obr1.

Description	E-value	Query Range	Subject Range
WRBA_BURS3 - Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1 NQOR_BURL3 - NAD(P)H dehydrogenase (quinone) OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R...	197.0	[0..4]	[201..1]
gi\|124879520, gi... - gi\|84352241\|ref\|ZP_00977210.1\| COG0655: Multimeric flavodoxin WrbA [Burkholderia cenocepacia PC184],... NQOR_BURCH - NAD(P)H dehydrogenase (quinone) OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_6131 PE=3 SV...	194.0	[0..4]	[201..1]
NQOR_BURCA - NAD(P)H dehydrogenase (quinone) OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_5766 PE=3 SV=1	194.0	[0..4]	[201..1]
NQOR_ALKEH - NAD(P)H dehydrogenase (quinone) OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLH...	193.0	[0..4]	[201..1]
gi\|124900922, gi... - gi\|84358557\|ref\|ZP_00983331.1\| COG0655: Multimeric flavodoxin WrbA [Burkholderia dolosa AUO158], gi\|...	192.0	[0..4]	[201..1]
NQOR_BURVG - NAD(P)H dehydrogenase (quinone) OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_66...	192.0	[0..4]	[201..1]
NQOR_BURCM - NAD(P)H dehydrogenase (quinone) OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_6077 ...	192.0	[0..4]	[201..1]
gi\|4454993 - gi\|4454993\|gb\|AAD21025.1\| 1,4-benzoquinone reductase [Phanerochaete chrysosporium]	191.0	[0..4]	[201..1]
NQOR_THICR - NAD(P)H dehydrogenase (quinone) OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_1010 PE=3 SV=1	190.0	[0..4]	[202..1]
gi\|91201551 - gi\|91201551\|emb\|CAJ74611.1\| strongly similar to flavoprotein WrbA [Candidatus Kuenenia stuttgartiens...	189.0	[0..4]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTANTVAIV IYSTYGHVVK LAEAEKAGIE KAGGKAVIYQ FPETLSPEIL EKMHAAPKPN  60
   61 YPVVTLDVLT QYDAFLFGYP TRYGTPPAQF RTFWDSTGGL WVQGALHGKY FGQFFSTGTL 120
  121 GGGQESTALT AMTSFVHHGM IFVPLGYKNT FSLMANVESI HGGSSWGAGS YAGADGSRNV 180
  181 SDDELEIARI QGETFFKTVF RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2a5lA
Description:	The crystal structure of the Trp repressor binding protein WrbA from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.32880196921974	bayes_pls_golite062009
binding	1.54529414520518	bayes_pls_golite062009
oxidoreductase activity	1.2698167260481	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
protein binding	0.191220795572558	bayes_pls_golite062009
transcription factor binding	0.0852528568191628	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: