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Protein Overview: npp106

General Information:
Name(s) found: npp106 / SPCC1739.14 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • nucleoporin Npp106 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 933 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nuclear pore [ISSLink to PubMed article]
    Biological Process: mRNA export from nucleus [IGILink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEAKEKG VNTSDSKGSQ IESSISDLRE KSQHLFGVLL EPQVPVIQYG LNQLEEKARN  60
   61 LESKVLLTRD GDTKAHYLLA ESGMNAEQTR QKIYSIHIHS PWDQLELDKK SLYEQPHTKL 120
  121 YNGQNVVASI ENGYQSNVYE FQLRLMKNNG IAWENTKTEF MEDVGKLLHS KDNSGLGTSI 180
  181 SMSLRPNLAR PLLTASSVKS QSVRSLREVG SNLPIPTGSL TKIDGLNNQL SNDLTRSQTT 240
  241 NIFGFAEKAS SFAAAVHKLN EARIRNQACH VWSLFASVSQ MVNTEVIQLF DAWSLLAHMI 300
  301 DETRYGMGDF EARHLALDSS SAALAVEKNC IEGSLKYLEN QFLSLIDLHL SDAGHITTVN 360
  361 SVEKVIAYSK LRFYKNGSWI KSTVSVVNDV PLWVVLFYLM RSGQLDAALQ FVNTYSDDFE 420
  421 KLGRSFPLYF YSYAKNPSLP LPKQLRDRLQ AEYGQLMKYA PEDPFKHAIY KLLGNCEPHR 480
  481 VSLPEVCVTS EDYMWIQLMF CRVNQNDVID SNGGQSTNSL FNLYQLEKKI VAFGPRYFNP 540
  541 KNNTPTNYFL ALLMCGEFER AISFLHTNYP VEATHFAVAM AYYGLLRTKN YEKNENILIY 600
  601 EADDVKINFP QLIIAYLKHL EYVDAAVYLD YIACIPLVPA YQACSINLTK ILLLQSHEFS 660
  661 KFLGDIKPDT ERTTGLLDLY LRLIPFDHDS LQKLYLEGAR EADDDGRFGD SIILYHLLGD 720
  721 YDTVIGVAIK NLSQSIVSRG LWSIDSKESK NMHISSNVVA SEAPDALAAN LLAMYESNPK 780
  781 KSAKVSATNK KALKVLLKVV KVQKLYGQEK WDEVLQLIEH LDLLPINEVQ AEFEPNEQIP 840
  841 PISARLRRRA FEFSTFQDEV LSVIPSLMYI SMSSIKALYR TISKLPVVNE ESKKKLQRLQ 900
  901 FKGSMLVMFS TMIESRLSPQ ILEYLQAEQL TLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] MSA 1.037954 View MSA. No confident structure predictions are available.
    2 View Details [218..933] PSI-BLAST 1000.0 No description for 2qx5A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle