YRC Public Data Repository - Protein Structure Prediction

Protein:	npp106
Organism:	Schizosaccharomyces pombe
Length:	933 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp106.

Description	E-value	Query Range	Subject Range
gi\|32415323, gi\|... - gi\|32415323\|ref\|XP_328141.1\| hypothetical protein ( (AL513408) related to nucleoporin-interacting pr... gi\|85082382 - gi\|85082382\|ref\|XP_956908.1\| hypothetical protein NCU01702 [Neurospora crassa OR74A]	1028.0	[0..15]	[931..217]
gi\|12718244 - gi\|12718244\|emb\|CAC28552.1\| related to nucleoporin-interacting protein NIC96 [Neurospora crassa]	989.0	[0..15]	[931..217]
gi\|42545059, gi\|... - gi\|46109094\|ref\|XP_381605.1\| hypothetical protein FG01429.1 [Gibberella zeae PH-1], gi\|42545059\|gb\|E...	969.0	[0..14]	[925..215]
gi\|38102894, gi\|... - gi\|39946620\|ref\|XP_362847.1\| hypothetical protein MGG_08590 [Magnaporthe grisea 70-15], gb\|EAA49675....	965.0	[0..3]	[925..129]
gi\|40742436, gi\|... - gi\|67541633\|ref\|XP_664584.1\| hypothetical protein AN6980.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	944.0	[0..13]	[932..79]
gi\|114662650 - gi\|114662650\|ref\|XP_510982.2\| PREDICTED: nucleoporin 93kDa [Pan troglodytes]	932.0	[0..6]	[932..90]
gi\|18606331 - gi\|18606331\|gb\|AAH23140.1\| Nucleoporin 93 [Mus musculus]	930.0	[0..25]	[932..6]
NUP93_RAT - Nuclear pore complex protein Nup93 OS=Rattus norvegicus GN=Nup93 PE=1 SV=1	923.0	[0..25]	[932..6]
gi\|73949816 - gi\|73949816\|ref\|XP_535293.2\| PREDICTED: similar to Nuclear pore complex protein Nup93 (Nucleoporin N...	920.0	[0..25]	[932..6]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEAKEKG VNTSDSKGSQ IESSISDLRE KSQHLFGVLL EPQVPVIQYG LNQLEEKARN  60
   61 LESKVLLTRD GDTKAHYLLA ESGMNAEQTR QKIYSIHIHS PWDQLELDKK SLYEQPHTKL 120
  121 YNGQNVVASI ENGYQSNVYE FQLRLMKNNG IAWENTKTEF MEDVGKLLHS KDNSGLGTSI 180
  181 SMSLRPNLAR PLLTASSVKS QSVRSLREVG SNLPIPT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-933]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLTKIDGLN NQLSNDLTRS QTTNIFGFAE KASSFAAAVH KLNEARIRNQ ACHVWSLFAS  60
   61 VSQMVNTEVI QLFDAWSLLA HMIDETRYGM GDFEARHLAL DSSSAALAVE KNCIEGSLKY 120
  121 LENQFLSLID LHLSDAGHIT TVNSVEKVIA YSKLRFYKNG SWIKSTVSVV NDVPLWVVLF 180
  181 YLMRSGQLDA ALQFVNTYSD DFEKLGRSFP LYFYSYAKNP SLPLPKQLRD RLQAEYGQLM 240
  241 KYAPEDPFKH AIYKLLGNCE PHRVSLPEVC VTSEDYMWIQ LMFCRVNQND VIDSNGGQST 300
  301 NSLFNLYQLE KKIVAFGPRY FNPKNNTPTN YFLALLMCGE FERAISFLHT NYPVEATHFA 360
  361 VAMAYYGLLR TKNYEKNENI LIYEADDVKI NFPQLIIAYL KHLEYVDAAV YLDYIACIPL 420
  421 VPAYQACSIN LTKILLLQSH EFSKFLGDIK PDTERTTGLL DLYLRLIPFD HDSLQKLYLE 480
  481 GAREADDDGR FGDSIILYHL LGDYDTVIGV AIKNLSQSIV SRGLWSIDSK ESKNMHISSN 540
  541 VVASEAPDAL AANLLAMYES NPKKSAKVSA TNKKALKVLL KVVKVQKLYG QEKWDEVLQL 600
  601 IEHLDLLPIN EVQAEFEPNE QIPPISARLR RRAFEFSTFQ DEVLSVIPSL MYISMSSIKA 660
  661 LYRTISKLPV VNEESKKKLQ RLQFKGSMLV MFSTMIESRL SPQILEYLQA EQLTLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qx5A
Description:	No description for 2qx5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits