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Protein Overview: matmc_2, SPMTR.0...

General Information:
Name(s) found: SPMTR.04 [Sanger Pombe]
matmc_2 / SPBC23G7.09 [Sanger Pombe]
matmc_1 / SPBC1711.02 [Sanger Pombe]
Description(s) found:
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  • pir||S00555 mating type protein Mc - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|7630160|emb|CAB88232.1| mating-type m-specific polypeptide mc 1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|4981|emb|CAA30481.1| unnamed protein product [Schizosaccharomyces pombe] [NCBI NR]
  • gi|4106686|emb|CAA22625.1| mating-type m-specific polypeptide mc 2 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112667|ref|NP_595875.1| mating-type m-specific polypeptide mc [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|19112659|ref|NP_595867.1| mating-type m-specific polypeptide mc [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|127466|sp|P10840.1|MATMC_SCHPO RecName: Full=Mating-type M-specific polypeptide Mc; Short=mat-Mc [NCBI NR]
  • |||mating-type m-specific polypeptide Mc|Schizosaccharomyces pombe|chr mating_type_region|||Manual [Sanger Pombe]
  • mating-type m-specific polypeptide mc [Sanger Pombe]
  • (P10840) Mating-type M-specific polypeptide Mc (mat-Mc) [Swiss-Prot]
  • Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe GN=matMCa PE=2 SV=1 [Swiss-Prot]
  • Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe GN=mat3-Mc PE=2 SV=1 [Swiss-Prot]
  • MATING-TYPE M-SPECIFIC POLYPEPTIDE MC: P10840;Q9URE7; [pompepVF.fasta]
  • MATING-TYPE M-SPECIFIC POLYPEPTIDE MC.: P10840;Q9URE7; [pompepVF.fasta]
  • MATING-TYPE M-SPECIFIC POLYPEPTIDE MC: CAB88232;P10840; [pompepV13]
  • MATING-TYPE M-SPECIFIC POLYPEPTIDE MC.: CAB88232;P10840; [pompepV13]
  • Mating-type M-specific polypeptide Mc (mat-Mc) [pompep4896]
  • |matmc||mating-type m-specific polypeptide mc [pompepnew.fasta]
  • |matmc||mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • mating-type m-specific polypeptide mc. [Schizosaccharomyces pombe]gi|19112659|ref|NP_595867.1| mating-type m-specific polypeptide mc [Schizosaccharomyces pombe]gi|4981|emb|CAA30481.1| unnamed protein product [Schizosaccharomyces pombe]gi|4106686|emb|CA [nrdb_11152004_Chlamydomonas]
  • |matmc_1|matmc|mating-type m-specific polypeptide mc 1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • |matmc_2|matmc|mating-type m-specific polypeptide mc 2|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC23G7.09 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC23G7.09 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC1711.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • unnamed protein product [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC1711.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |matmc_1|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • |matmc_2|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • Mating-type m-specific polypeptide Mc OS=Schizosaccharomyces pombe GN=matMc PE=4 SV=1 [UniProt_SPombe_10-04-2010_reversed.fasta]
  • |mat3-Mc|matMc, mat3Mc, mat3-Mc-silenced|mating-type m-specific HMG-box transcription factor Mc at silenced MAT3 locus|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • |mat1-Mc|matMc, mat1Mc|mating-type m-specific polypeptide Mc|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mat1-Mc PE=2 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    cellular_component [ND]
    Biological Process: conjugation with cellular fusion [RCALink to PubMed article]
    mating type determination [NASLink to PubMed article]
    regulation of transcription, DNA-dependent [RCALink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: transcription factor activity [NASLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHQELSAG SPISYDFLDP DWCFKRYLTK DALHSIETGK GAAYFVPDGF TPILIPNSQS  60
   61 YLLDGNSAQL PRPQPISFTL DQCKVPGYIL KSLRKDTTST ERTPRPPNAF ILYRKEKHAT 120
  121 LLKSNPSINN SQVSKLVGEM WRNESKEVRM RYFKMSEFYK AQHQKMYPGY KYQPRKNKVK 180
  181 R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 21.0 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.18437890314152 bayes_pls_golite062009
  • DNA binding
    		•  2.86811486797095 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.43458430104304 bayes_pls_golite062009
  • transcription factor activity
    		•  2.08899567886243 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94466966241938 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.92910525830109 bayes_pls_golite062009
  • protein binding
    		•  1.15458948773083 bayes_pls_golite062009
  • four-way junction DNA binding
    		•  0.967596724230119 bayes_pls_golite062009
  • transcription activator activity
    		•  0.82109798496999 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.61778484065575 bayes_pls_golite062009
  • DNA secondary structure binding
    		•  0.17914787703581 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0848256316538398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle