YRC Public Data Repository - Protein Structure Prediction

Protein:	matmc_2, SPMTR.0...
Organism:	Schizosaccharomyces pombe
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for matmc_2, SPMTR.0....

Description	E-value	Query Range	Subject Range
MATMC_SCHKA - Mating-type M-specific polypeptide Mc OS=Schizosaccharomyces kambucha GN=matMc PE=3 SV=1	137.0	[0..1]	[181..1]
gi\|113422294 - gi\|113422294\|ref\|XP_933608.2\| PREDICTED: similar to High mobility group protein B1 (High mobility gr...	130.0	[0..66]	[179..85]
gi\|94383491, gi\|... - gi\|94383491\|ref\|XP_979346.1\| PREDICTED: similar to High mobility group protein 2 (HMG-2) [Mus muscul...	128.0	[0..56]	[181..103]
gi\|109511369, gi... - gi\|109514150\|ref\|XP_001067329.1\| PREDICTED: similar to High mobility group protein 4 (HMG-4) (High m...	123.0	[0..62]	[180..414]
gi\|76609479 - gi\|76609479\|ref\|XP_610926.2\| PREDICTED: similar to high-mobility group box 3 [Bos taurus]	123.0	[0..62]	[180..403]
gi\|109086413 - gi\|109086413\|ref\|XP_001083536.1\| PREDICTED: similar to SRY-box 17 isoform 2 [Macaca mulatta]	122.0	[0..38]	[181..1]
gi\|108871822, gi... - gi\|157130629\|ref\|XP_001655745.1\| hypothetical protein AaeL_AAEL011831 [Aedes aegypti], gi\|108871822\|...	122.0	[0..94]	[181..127]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHQELSAG SPISYDFLDP DWCFKRYLTK DALHSIETGK GAAYFVPDGF TPILIPNSQS  60
   61 YLLDGNSAQL PRPQPISFTL DQCKVPGYIL KSLRKDTTST ERTPRPPNAF ILYRKEKHAT 120
  121 LLKSNPSINN SQVSKLVGEM WRNESKEVRM RYFKMSEFYK AQHQKMYPGY KYQPRKNKVK 180
  181 R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	2gzkA
Description:	No description for 2gzkA was found.

Predicted functions:

Term	Confidence	Notes
binding	3.18437890314152	bayes_pls_golite062009
DNA binding	2.86811486797095	bayes_pls_golite062009
nucleic acid binding	2.43458430104304	bayes_pls_golite062009
transcription factor activity	2.08899567886243	bayes_pls_golite062009
transcription regulator activity	1.94466966241938	bayes_pls_golite062009
sequence-specific DNA binding	1.92910525830109	bayes_pls_golite062009
protein binding	1.15458948773083	bayes_pls_golite062009
four-way junction DNA binding	0.967596724230119	bayes_pls_golite062009
transcription activator activity	0.82109798496999	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.61778484065575	bayes_pls_golite062009
DNA secondary structure binding	0.17914787703581	bayes_pls_golite062009
transcription repressor activity	0.0848256316538398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: