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Protein Overview: matmc_2, SPMTR.0...

General Information:
Name(s) found: SPMTR.04 [Sanger Pombe]
matmc_2 / SPBC23G7.09 [Sanger Pombe]
matmc_1 / SPBC1711.02 [Sanger Pombe]
Description(s) found:
Found 33 descriptions.
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  • |||mating-type m-specific polypeptide Mc|Schizosaccharomyces pombe|chr mating_type_region|||Manual [Sanger Pombe]
  • mating-type m-specific polypeptide mc [Sanger Pombe]
  • mating-type m-specific polypeptide mc [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    cellular_component [ND]
    Biological Process: conjugation with cellular fusion [RCALink to PubMed article]
    mating type determination [NASLink to PubMed article]
    regulation of transcription, DNA-dependent [RCALink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: transcription factor activity [NASLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHQELSAG SPISYDFLDP DWCFKRYLTK DALHSIETGK GAAYFVPDGF TPILIPNSQS  60
   61 YLLDGNSAQL PRPQPISFTL DQCKVPGYIL KSLRKDTTST ERTPRPPNAF ILYRKEKHAT 120
  121 LLKSNPSINN SQVSKLVGEM WRNESKEVRM RYFKMSEFYK AQHQKMYPGY KYQPRKNKVK 180
  181 R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 21.0 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.18437890314152 bayes_pls_golite062009
  • DNA binding
    		•  2.86811486797095 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.43458430104304 bayes_pls_golite062009
  • transcription factor activity
    		•  2.08899567886243 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94466966241938 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.92910525830109 bayes_pls_golite062009
  • protein binding
    		•  1.15458948773083 bayes_pls_golite062009
  • four-way junction DNA binding
    		•  0.967596724230119 bayes_pls_golite062009
  • transcription activator activity
    		•  0.82109798496999 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.61778484065575 bayes_pls_golite062009
  • DNA secondary structure binding
    		•  0.17914787703581 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0848256316538398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle