Protein Overview: SPAC13G6.06c

General Information:
Name(s) found:	SPAC13G6.06c [Sanger Pombe]
Description(s) found: Found 17 descriptions. SHOW ALL	glycine cleavage complex subunit P [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	1017 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [IDA][ISS] glycine cleavage complex [ISS]
Biological Process:	glycine decarboxylation via glycine cleavage system [ISS]
Molecular Function:	pyridoxal phosphate binding [IEA] glycine dehydrogenase (decarboxylating) activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRACSKLQY HGVNTSLSRH LFLAKRNLSI SSACLEAKNS QKFPALDTFE PRHIGPSKTD  60
   61 QQYQLESLGY KDFDSFLKDV IPDSVRTPES QLMAFGSVNP NEKNPPVNYS ESEFTTLANN 120
  121 VANQNKLIKS FIGMGYYNVK LPAAIQRNVL ENPEWYTQYT PYQAEISQGR LESMMNYQTM 180
  181 IADLTGLSIS NASLLDEGTA AGEAMVMLMA NDKKKRKTFL VDKNIYPNTL SVLRTRASGF 240
  241 GIKIELDNIT PELITKSAKH VFGIFVQYPA ADGSIFDYGH LAATARSFNM HVVAATDLLA 300
  301 LTILKSPGEW GADVAVGSTQ RFGLPMGYGG PHAGFFACSE EFKRKIPGRL IGLSKDRLEN 360
  361 PAYRLALQTR EQHIRREKAT SNICTAQALL ANMSAFYAIY HGPNGLQEIA NRIYASTSFL 420
  421 KSALESSGYK IVNKSHFFDT LTIEVESADK VLAKALDHGY NLRKVDDSHV GLSLDETVCD 480
  481 KDIQALFSIF NINKSVDQYY MEIATSEPNG NSASTVDNLS ICSLPENFRR TTLYLQHPVF 540
  541 NRYHSETELM RYIHHLQSKD LSLAHAMTPL GSCTMKLNAV TEMMPITNPL FANIHPYVPE 600
  601 EQAKGYRHVI EDLQLMLTTI TGFDAACFQP NSGAAGEYTG LSVIRAYQRS IGQGHRNICL 660
  661 IPVSAHGTNP ASAAMAGFTV IPVKCLNNGY LDMQDLKEKA SKHADKLAAF MVTYPSTFGI 720
  721 FEPDVKEALE VIHEHGGQVY FDGANMNAMV GLCKAGDIGA DVCHLNLHKT FCIPHGGGGP 780
  781 GVGPICVKKH LADFLPSHPV VSCGGKNGIT SVSSSPFGSA GILPISWAYM RMMGLAGLRD 840
  841 ASKAALLNAN YMAKRLSSHY KLVYTNKNNL CAHEFILDAR EFKATAGVDA TDIAKRLQDY 900
  901 SFHAPTLSWP IANTLMIEPT ESESMYEMDR FCDALISIRQ EIREIEEGLQ PKDNNLLVNA 960
  961 PHPQKDIASE KWDRPYTRER AVYPVPLLKE RKFWPSVARL DDAYGDKNLF CTCSPVV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..477]	PSI-BLAST	61.154902	Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
2	View Details	[478..529]	PSI-BLAST	16.69897	No description for 2qmaA was found.
3	View Details	[530..1017]	PSI-BLAST	58.09691	Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
glycine dehydrogenase (decarboxylating) activity	8.00572280567771	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	8.00572280567771	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	3.14486270422678	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
methyltransferase activity	0.681623261233707	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.619695949258279	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.60304280865376	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.234399054481664	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009

2

No functions predicted.

3

Term	Confidence	Notes
glycine dehydrogenase (decarboxylating) activity	8.00572280567771	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	8.00572280567771	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	3.14486270422678	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
methyltransferase activity	0.681623261233707	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.619695949258279	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.60304280865376	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.234399054481664	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.84

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle