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Protein Overview: csx1

General Information:
Name(s) found: csx1 / SPAC17A2.09c [Sanger Pombe]
Description(s) found:
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  • pir||T37810 RNA-binding post-transcription regulator csx1 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3121946|sp|O13759.1|CSX1_SCHPO RecName: Full=RNA-binding post-transcriptional regulator csx1 [NCBI NR]
  • gi|2656019|emb|CAB16569.1| RNA-binding protein Csx1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115155|ref|NP_594243.1| RNA-binding protein Csx1 [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein Csx1 [Sanger Pombe]
  • RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1 [Swiss-Prot]
  • RNA-BINDING PROTEIN; POST-TRANSCRIPTIONAL REGULATOR: O13759;Q09331;Q09335; [pompepVF.fasta]
  • RNA-binding post-transcriptional regulator csx1 [pompep4896]
  • |csx1||RNA-binding protein [pompepnew.fasta]
  • |csx1||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • rna-binding post-transcriptional regulator csx1. [Schizosaccharomyces pombe]gi|2656019|emb|CAB16569.1| csx1 [Schizosaccharomyces pombe]gi|3121946|sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1gi|7493344|pir||T37810 RNA-binding pos [nrdb_11152004_Chlamydomonas]
  • (O13759) RNA-binding post-transcriptional regulator csx1 [pompep4896_normal_reversed]
  • |csx1||RNA-binding protein Csx1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC17A2.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC17A2.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csx1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of mRNA stability involved in response to stress [IMPLink to PubMed article]
    Molecular Function: RNA binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDCLYRRS SLFDTSFVPL HSSIPATSKM SASNSDVNAP ISPVVDEGKS ELVSPTLERL  60
   61 VAPFNCSPSS TPLQDVAGVG SKMSDTLWMG DLEPWMDATF IQQLWASLNE PVNVKVMRSK 120
  121 ASSSETLISY CFVQFSSSAA AERALMKYNN TMIPGAHCTF KLNWATGGGI QHNNFVSRDP 180
  181 EFSIFVGDLL PTTEDSDLFM TFRSIYPSCT SAKIIVDPVT GLSRKYGFVR FSSEKEQQHA 240
  241 LMHMQGYLCQ GRPLRISVAS PKSRASIAAD SALGIVPTST SNRQPNQDLC SMDPLNTTVF 300
  301 VGGLASNLSE KDLQVCFQPF GRILNIKIPF GKGCGFVQYS EKSAAEKAIN TMQGALVGTS 360
  361 HIRLAWGHNT LPVSALSQSQ SQVSDEGFDR TLSANQIFGM NQSVIGANSG SSNSSGSSLK 420
  421 SAPVSPRTAA AQSLLPNSVV SSINGMNSVN FSTISPPPLS RSASISPTLS GSGSGLTPLS 480
  481 SHFPSAATGL VGGQVYPQSS VLQSSKINGS AKVQPSVKLP EWLQPFSGNN HNSFATQDLL 540
  541 TRVSSLKLVD DEQPASLNGS AFQARASRPW NLGRERQSSL IDLRHELEQN ENGLEKSGFG 600
  601 LNLRGRLPPR SYSTFNCTGQ YLQPSLRLSR DS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..279] PSI-BLAST 49.221849 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [280..371] PSI-BLAST 17.0 Polypyrimidine tract-binding protein
    3 View Details [372..488] deduced N/A No confident structure predictions are available.
    4 View Details [489..632] PSI-BLAST 21.0 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  4.63987691433124 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.05055109233024 bayes_pls_golite062009
  • mRNA binding
    		•  3.54495985180603 bayes_pls_golite062009
  • binding
    		•  3.00411894202318 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
    		• 1.35163561991147 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.884269546056316 bayes_pls_golite062009
  • DNA binding
    		•  0.841333741555926 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.599389001184667 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.544292786424842 bayes_pls_golite062009
  • transcription factor activity
    		•  0.182209144070426 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  4.63987691433124 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.05055109233024 bayes_pls_golite062009
  • mRNA binding
    		•  3.54495985180603 bayes_pls_golite062009
  • binding
    		•  3.00411894202318 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
    		• 1.35163561991147 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.884269546056316 bayes_pls_golite062009
  • DNA binding
    		•  0.841333741555926 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.599389001184667 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.544292786424842 bayes_pls_golite062009
  • transcription factor activity
    		•  0.182209144070426 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  3.6067898155184 bayes_pls_golite062009
  • mRNA binding
    		•  3.56033450577296 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  3.03728178586535 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  2.95613613030851 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.91838330515065 bayes_pls_golite062009
  • poly(A) RNA binding
    		•  2.66269581586161 bayes_pls_golite062009
  • poly-purine tract binding
    		•  2.60937924017999 bayes_pls_golite062009
  • binding
    		•  2.12178506555766 bayes_pls_golite062009
  • protein binding
    		•  0.856075580719879 bayes_pls_golite062009
  • catalytic activity
    		•  0.287695754348243 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle