| Protein: | csx1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 632 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csx1.
| Description | E-value | Query Range |
Subject Range |
|
|
425.0 | [0..16] | [615..36] |
|
|
420.0 | [0..16] | [615..36] |
|
|
420.0 | [0..16] | [615..36] |
|
|
420.0 | [0..16] | [615..36] |
|
|
419.0 | [0..16] | [615..36] |
|
Region A: Residues: [1-279] |
1 11 21 31 41 51
| | | | | |
1 MSIDCLYRRS SLFDTSFVPL HSSIPATSKM SASNSDVNAP ISPVVDEGKS ELVSPTLERL 60
61 VAPFNCSPSS TPLQDVAGVG SKMSDTLWMG DLEPWMDATF IQQLWASLNE PVNVKVMRSK 120
121 ASSSETLISY CFVQFSSSAA AERALMKYNN TMIPGAHCTF KLNWATGGGI QHNNFVSRDP 180
181 EFSIFVGDLL PTTEDSDLFM TFRSIYPSCT SAKIIVDPVT GLSRKYGFVR FSSEKEQQHA 240
241 LMHMQGYLCQ GRPLRISVAS PKSRASIAAD SALGIVPTS
|
| Detection Method: |  |
| Confidence: | 49.221849 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 4.05055109233024 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| 1.35163561991147 | bayes_pls_golite062009 | |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 0.884269546056316 | bayes_pls_golite062009 |
| DNA binding | 0.841333741555926 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.544292786424842 | bayes_pls_golite062009 |
| transcription factor activity | 0.182209144070426 | bayes_pls_golite062009 |
|
Region A: Residues: [280-371] |
1 11 21 31 41 51
| | | | | |
1 TSNRQPNQDL CSMDPLNTTV FVGGLASNLS EKDLQVCFQP FGRILNIKIP FGKGCGFVQY 60
61 SEKSAAEKAI NTMQGALVGT SHIRLAWGHN TL
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 4.05055109233024 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| 1.35163561991147 | bayes_pls_golite062009 | |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 0.884269546056316 | bayes_pls_golite062009 |
| DNA binding | 0.841333741555926 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.544292786424842 | bayes_pls_golite062009 |
| transcription factor activity | 0.182209144070426 | bayes_pls_golite062009 |
|
Region A: Residues: [372-488] |
1 11 21 31 41 51
| | | | | |
1 PVSALSQSQS QVSDEGFDRT LSANQIFGMN QSVIGANSGS SNSSGSSLKS APVSPRTAAA 60
61 QSLLPNSVVS SINGMNSVNF STISPPPLSR SASISPTLSG SGSGLTPLSS HFPSAAT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [489-632] |
1 11 21 31 41 51
| | | | | |
1 GLVGGQVYPQ SSVLQSSKIN GSAKVQPSVK LPEWLQPFSG NNHNSFATQD LLTRVSSLKL 60
61 VDDEQPASLN GSAFQARASR PWNLGRERQS SLIDLRHELE QNENGLEKSG FGLNLRGRLP 120
121 PRSYSTFNCT GQYLQPSLRL SRDS
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.6067898155184 | bayes_pls_golite062009 |
| mRNA binding | 3.56033450577296 | bayes_pls_golite062009 |
| single-stranded RNA binding | 3.03728178586535 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 2.95613613030851 | bayes_pls_golite062009 |
| nucleic acid binding | 2.91838330515065 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.60937924017999 | bayes_pls_golite062009 |
| binding | 2.12178506555766 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
