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Protein Overview: crb3

General Information:
Name(s) found: crb3 / SPAC13G7.08c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • WD repeat protein Crb3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cell division site [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLLSGCEA IEGEPSNVLC HNLHTGTLVS TFRQSSPAKN ATCTTLNHLL SAQHTRPQLN  60
   61 IHNFGKEILD QSIILPEILI CVQSSPCGSW LAAGTEKGNL YIWSLKSGAL IYFFRAHYQP 120
  121 LTILKFSNDG MVLFTASNDG DVFAWLISTL VDQNSTFETS NSSVKAISHF SGHKRSIVSM 180
  181 EIGPGPIVSG RLYTASEDNT IRIWDVSTGN LLTTIALPST PSCMTVDPSE RVVYVGNEKG 240
  241 IIWIPLYTGS STFSNNVKEK KRVTSVDNTT IPNAIGGMGR VVDYNDSRES SIISCQSPIT 300
  301 TLTVSFDASL LISGDKDGNV LVWDSVSRQV LRRLVQYYSP VSFLQCKVDK ISFYSNSSLS 360
  361 FPVLKRMITN EYLNSDVRIC IQDDGVEQLM QPENILKISS DIVTQGSESS WRAKAETSEM 420
  421 QLKEAKRLFY ELKQIHQALW EKYLQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 38.09691 F-box/WD-repeat protein 1 (beta-TRCP1)
    2 View Details [66..446] PSI-BLAST 55.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
  • snoRNA binding
    		•  1.75441121456645 bayes_pls_golite062009
    		• 1.56935945513861 bayes_pls_golite062009
  • RNA binding
    		•  1.50295916950465 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • protein binding
    		•  0.987581964031738 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • ligase activity
    		•  0.20682813699621 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle