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Protein Overview: sec28

General Information:
Name(s) found: sec28 / SPBC24C6.05 [Sanger Pombe]
Description(s) found:
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  • gi|7490241|pir||T39969 coatomer epsilon subunit - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6647484|sp|O74767.1|COPE_SCHPO RecName: Full=Probable coatomer subunit epsilon; AltName: Full=Epsilon-coat protein; Short=Epsilon-COP [NCBI NR]
  • gi|3687479|emb|CAA21149.1| coatomer epsilon subunit (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112751|ref|NP_595959.1| coatomer epsilon subunit (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • coatomer epsilon subunit [Sanger Pombe]
  • Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe GN=sec28 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE COATOMER EPSILON SUBUNIT: O74767; [pompepVF.fasta]
  • Probable coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) [pompep4896]
  • |sec28||putative coatomer epsilon subunit [pompepnew.fasta]
  • |sec28||coatomer (epsilon subunit) (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • SPBC24C6.05 [Schizosaccharomyces pombe]gi|19112751|ref|NP_595959.1| putative coatomer epsilon subunit [Schizosaccharomyces pombe]gi|7490241|pir||T39969 coatomer epsilon subunit - fission yeast (Schizosaccharomyces pombe)gi|6647484|sp|O74767|COPE_SCHPO [nrdb_11152004_Chlamydomonas]
  • |sec28||coatomer |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O74767) Probable coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) [pompep4896_normal_reversed]
  • |sec28||coatomer epsilon subunit |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC24C6.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Probable coatomer subunit epsilon (Epsilon-coat protein) (Epsilon-COP) [nr-271106-contam.fasta]
  • SPBC24C6.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    COPI vesicle coat [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    late endosome to vacuole transport via multivesicular body sorting pathway [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWEASLSN ELYFVRQYFY SGNYTKLFEI DTTSMSEKGL ELTEIYMARA KLALGESLES  60
   61 IQSILTQKTP GSAAILALAG EGNMELIIDQ HGNSDSVVQT LGAIFQIKNG SFDDAMDLLK 120
  121 KSVENLEAVA LQVYIHLREH KIEAAEQTLK QALDWADEEI VLQLAQSWIK IVSGGVESYN 180
  181 DAFYVFEELN GTDSNPMTLT GMACADICLL RPEEALSSLK TALDSQPNYE EALSNMTTAI 240
  241 TDLGPDAPSQ AKNILSSFTN SSTLKLNDHL NEKAQEFDTF STQFLSTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..288] PSI-BLAST 30.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.14253214573541 bayes_pls_golite062009
  • protein binding
    		•  1.83529176977066 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.69717675806841 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0598606763736398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle