YRC Public Data Repository - Protein Structure Prediction

Protein:	sec28
Organism:	Schizosaccharomyces pombe
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec28.

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	196.0	[0..6]	[287..991]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	178.0	[0..2]	[287..116]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	177.0	[0..4]	[287..255]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	174.0	[0..2]	[287..116]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	174.0	[0..2]	[287..106]
gi\|74007684 - gi\|74007684\|ref\|XP_858918.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 11 ...	173.0	[0..2]	[287..116]

Back

Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWEASLSN ELYFVRQYFY SGNYTKLFEI DTTSMSEKGL ELTEIYMARA KLALGESLES  60
   61 IQSILTQKTP GSAAILALAG EGNMELIIDQ HGNSDSVVQT LGAIFQIKNG SFDDAMDLLK 120
  121 KSVENLEAVA LQVYIHLREH KIEAAEQTLK QALDWADEEI VLQLAQSWIK IVSGGVESYN 180
  181 DAFYVFEELN GTDSNPMTLT GMACADICLL RPEEALSSLK TALDSQPNYE EALSNMTTAI 240
  241 TDLGPDAPSQ AKNILSSFTN SSTLKLNDHL NEKAQEFDTF STQFLSTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.14253214573541	bayes_pls_golite062009
protein binding	1.83529176977066	bayes_pls_golite062009
signal sequence binding	1.13935627118933	bayes_pls_golite062009
peroxisome targeting sequence binding	0.69717675806841	bayes_pls_golite062009
syntaxin binding	0.0598606763736398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: