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Protein Overview: cid1

General Information:
Name(s) found: cid1 / SPAC19D5.03 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • poly(A) polymerase Cid1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 405 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: RNA 3' uridylation [IDALink to PubMed article]
    DNA replication checkpoint [IMPLink to PubMed article]
    S-M checkpoint [TASLink to PubMed article]
    RNA polyadenylation [IDALink to PubMed article]
    Molecular Function: RNA uridylyltransferase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISSAQFIP GVHTVEEIEA EIHKNLHISK SCSYQKVPNS HKEFTKFCYE VYNEIKISDK  60
   61 EFKEKRAALD TLRLCLKRIS PDAELVAFGS LESGLALKNS DMDLCVLMDS RVQSDTIALQ 120
  121 FYEELIAEGF EGKFLQRARI PIIKLTSDTK NGFGASFQCD IGFNNRLAIH NTLLLSSYTK 180
  181 LDARLKPMVL LVKHWAKRKQ INSPYFGTLS SYGYVLMVLY YLIHVIKPPV FPNLLLSPLK 240
  241 QEKIVDGFDV GFDDKLEDIP PSQNYSSLGS LLHGFFRFYA YKFEPREKVV TFRRPDGYLT 300
  301 KQEKGWTSAT EHTGSADQII KDRYILAIED PFEISHNVGR TVSSSGLYRI RGEFMAASRL 360
  361 LNSRSYPIPY DSLFEEAPIP PRRQKKTDEQ SNKKLLNETD GDNSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..405] PSI-BLAST 66.221849 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  3.12632133477736 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.03741071977036 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.35958790110182 bayes_pls_golite062009
  • RNA binding
    		•  1.26469116227089 bayes_pls_golite062009
  • transferase activity
    		•  1.1355378442847 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.920730104361505 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.913497340211638 bayes_pls_golite062009
  • binding
    		•  0.841038039546473 bayes_pls_golite062009
  • DNA binding
    		•  0.782730432596522 bayes_pls_golite062009
  • catalytic activity
    		•  0.75232920999699 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.747086661208511 bayes_pls_golite062009
  • protein binding
    		•  0.117945573723438 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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