YRC Public Data Repository - Protein Structure Prediction

Protein:	cid1
Organism:	Schizosaccharomyces pombe
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cid1.

Description	E-value	Query Range	Subject Range
gi\|46403037 - gi\|46403037\|gb\|AAS92532.1\| CID1 [Cryptococcus gattii] gi\|46403037 - gi\|46403037\|gb\|AAS92532.1\| CID1 [Cryptococcus gattii]	279.0	[0..43]	[404..13]
gi\|49112537, gi\|... - gi\|67901522\|ref\|XP_681017.1\| hypothetical protein AN7748.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	279.0	[0..28]	[399..17]
gi\|56566282 - gi\|56566282\|gb\|AAN75620.2\| CID1 [Cryptococcus neoformans var. neoformans]	276.0	[0..43]	[404..13]
gi\|56566240 - gi\|56566240\|gb\|AAN75161.2\| CID1 [Cryptococcus neoformans var. grubii]	276.0	[0..43]	[404..13]
gi\|56566306 - gi\|56566306\|gb\|AAN75730.2\| CID1 [Cryptococcus neoformans var. neoformans] gi\|58266784, gi\|... - gi\|58266784\|ref\|XP_570548.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g... gi\|134110354, gi... - gi\|50258672\|gb\|EAL21357.1\| hypothetical protein CNBD0540 [Cryptococcus neoformans var. neoformans B-...	275.0	[0..43]	[404..13]
URT1_ARATH - UTP:RNA uridylyltransferase 1 OS=Arabidopsis thaliana GN=URT1 PE=1 SV=2	274.0	[0..34]	[377..424]
gi\|38100945, gi\|... - gi\|86196877\|gb\|EAQ71515.1\| hypothetical protein MGCH7_ch7g922 [Magnaporthe grisea 70-15], gi\|3995683...	269.0	[0..29]	[394..413]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISSAQFIP GVHTVEEIEA EIHKNLHISK SCSYQKVPNS HKEFTKFCYE VYNEIKISDK  60
   61 EFKEKRAALD TLRLCLKRIS PDAELVAFGS LESGLALKNS DMDLCVLMDS RVQSDTIALQ 120
  121 FYEELIAEGF EGKFLQRARI PIIKLTSDTK NGFGASFQCD IGFNNRLAIH NTLLLSSYTK 180
  181 LDARLKPMVL LVKHWAKRKQ INSPYFGTLS SYGYVLMVLY YLIHVIKPPV FPNLLLSPLK 240
  241 QEKIVDGFDV GFDDKLEDIP PSQNYSSLGS LLHGFFRFYA YKFEPREKVV TFRRPDGYLT 300
  301 KQEKGWTSAT EHTGSADQII KDRYILAIED PFEISHNVGR TVSSSGLYRI RGEFMAASRL 360
  361 LNSRSYPIPY DSLFEEAPIP PRRQKKTDEQ SNKKLLNETD GDNSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.221849
Match:	1f5aA
Description:	Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleotidyltransferase activity	3.12632133477736	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.03741071977036	bayes_pls_golite062009
nucleic acid binding	1.35958790110182	bayes_pls_golite062009
RNA binding	1.26469116227089	bayes_pls_golite062009
transferase activity	1.1355378442847	bayes_pls_golite062009
DNA polymerase activity	0.920730104361505	bayes_pls_golite062009
DNA-directed DNA polymerase activity	0.913497340211638	bayes_pls_golite062009
binding	0.841038039546473	bayes_pls_golite062009
DNA binding	0.782730432596522	bayes_pls_golite062009
catalytic activity	0.75232920999699	bayes_pls_golite062009
polynucleotide adenylyltransferase activity	0.747086661208511	bayes_pls_golite062009
protein binding	0.117945573723438	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: