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Protein Overview: FBpp0310720, RpS...

General Information:
Name(s) found: FBpp0310720 [FlyBase]
FBpp0300512 [FlyBase]
RpS10b-PC / FBpp0074501 [FlyBase]
RpS10b-PB / FBpp0074500 [FlyBase]
Description(s) found:
Found 47 descriptions.
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  • type=protein; loc=X:19492467..19492949; ID=FBpp0310720; name=RpS10b-PE; parent=FBgn0261593,FBtr0344339; dbxref=FlyBase:FBpp0310720,FlyBase_Annotation_IDs:CG14206-PE; MD5=0ae8e030c62f6023a9a1cee4231259cf; length=160; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:19492467..19492949; ID=FBpp0300512; name=RpS10b-PD; parent=FBgn0261593,FBtr0308192; dbxref=FlyBase:FBpp0300512,FlyBase_Annotation_IDs:CG14206-PD,REFSEQ:NP_001245758,GB_protein:AFH07470; MD5=0ae8e030c62f6023a9a1cee4231259cf; length=160; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein S10b is referred to in FlyBase by the symbol Dmel\RpS10b (CG14206, FBgn0031035). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:19492064..19493111. It has the cytological map location 18D3. There is experimental evidence that it has the molecular function</span>: SUMO binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene Ribosomal protein S10b is referred to in FlyBase by the symbol Dmel\RpS10b (CG14206, FBgn0031035). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:19492064..19493111. It has the cytological map location 18D3. There is experimental evidence that it has the molecular function</span>: SUMO binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 160 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [ISS]
    Biological Process: NONE FOUND
    Molecular Function: SUMO binding [IPI]
    structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMPKAHRVA IYEYLFKEGV IVAKKDFHAQ KHPELESIPN LHVIKAMQSL HSRGLVKEQF  60
   61 AWRHYYWYLT NEGIEELRSY LHLPPEIVPS TLKRPARSET VRPRPAVGGP RGPGDASKTG 120
  121 EDRSAYRRAP GGSGVDKKGD VGPGAGEVEF RGGFGRGSRN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] FFAS03 1.02 Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  5.31568733625259 bayes_pls_golite062009
  • structural molecule activity
    		•  5.08906334129014 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.15604421023994 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.03746013592931 bayes_pls_golite062009
  • DNA binding
    		•  2.94000725003786 bayes_pls_golite062009
  • binding
    		•  2.35442673361809 bayes_pls_golite062009
  • transcription factor activity
    		•  2.26980753972323 bayes_pls_golite062009
  • protein binding
    		•  1.12485453632591 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.948991080726164 bayes_pls_golite062009
  • transcription activator activity
    		•  0.818477312720578 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.679859821399589 bayes_pls_golite062009
  • RNA binding
    		•  0.352569950847387 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.205052011867554 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle