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Protein Overview: CE40625

General Information:
Name(s) found: CE40625 [WormBase]
Description(s) found:
Found 7 descriptions.
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  • WBGene00020648 protease inhibitor status:Partially_confirmed UniProt:A0PCJ0 protein_id:ABL01528.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 646 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [IEALink to PubMed article]
    Biological Process: lipid catabolic process [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    phospholipid metabolic process [IEALink to PubMed article]
    Molecular Function: phospholipase A2 activity [IEALink to PubMed article]
    peptidase inhibitor activity [IEALink to PubMed article]
    serine-type endopeptidase inhibitor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWEVRIKKI KFKLHCICLP GFVCRLPKNV GFACGVTTPH SAYYFDSEIR ECIEFMFEGC  60
   61 GGNQNRFSSR QECINGCKSL TQCGKGMPLM DFAGNIKRCD GERVPCPGSH ECVGNGMSNR 120
  121 ICQASVHPGT PCGVPPATRY YFDSSSKTCR PFAFTGCGGN ENNFKGKGEC MMFCSSEIIC 180
  181 PRGEPHADRY SINNIATCME DKHCPRNYTC TSKVGKKGAC CPSKEFVCGT PFEIKNNCRK 240
  241 PEPVNTWWFD YRKGECKRAE HSNCEEHFNS FANQEQCADY CVGTCPNNLE VHSNPRTGQP 300
  301 HLCDFLKNEG CPMGFECLKS SPYASICCKT HPVCPSAESI LLVDEENEAV RCSSSRDSCP 360
  361 EQYMCQQAKN LEHICCTKPL NCPAGMDALR ENGGRPRICS MGVDGNCPHD HMCVQGDGSF 420
  421 GAARHLCCKP RKKCVIPYVD PDKKRPIRCF PGDQSCPIST DCLPALENSE SFSNLTNAID 480
  481 VMFFCCHTVS IFSCPDGASP FLDPNSGQPA TCLASNPFSC PAEHSCTALM DGSTACCPIQ 540
  541 TPLCVEALVS DDGSPKTCLG WDDNTTCPQG KCQKAMDGVY YCCRPPMMIL QNNAPIVPQV 600
  601 EGVSDRVTEY IACSLGILYT DFVKPKKKRQ PEYLKLLRDR RASKLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..404] PSI-BLAST 5.39794 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    2 View Details [405..646] PSI-BLAST 5.221849 Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle