| Protein: | CE40625 |
| Organism: | Caenorhabditis elegans |
| Length: | 646 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40625.
| Description | E-value | Query Range |
Subject Range |
|
|
246.0 | [0..7] | [644..347] |
|
Region A: Residues: [1-404] |
1 11 21 31 41 51
| | | | | |
1 MSWEVRIKKI KFKLHCICLP GFVCRLPKNV GFACGVTTPH SAYYFDSEIR ECIEFMFEGC 60
61 GGNQNRFSSR QECINGCKSL TQCGKGMPLM DFAGNIKRCD GERVPCPGSH ECVGNGMSNR 120
121 ICQASVHPGT PCGVPPATRY YFDSSSKTCR PFAFTGCGGN ENNFKGKGEC MMFCSSEIIC 180
181 PRGEPHADRY SINNIATCME DKHCPRNYTC TSKVGKKGAC CPSKEFVCGT PFEIKNNCRK 240
241 PEPVNTWWFD YRKGECKRAE HSNCEEHFNS FANQEQCADY CVGTCPNNLE VHSNPRTGQP 300
301 HLCDFLKNEG CPMGFECLKS SPYASICCKT HPVCPSAESI LLVDEENEAV RCSSSRDSCP 360
361 EQYMCQQAKN LEHICCTKPL NCPAGMDALR ENGGRPRICS MGVD
|
| Detection Method: |  |
| Confidence: | 5.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [405-646] |
1 11 21 31 41 51
| | | | | |
1 GNCPHDHMCV QGDGSFGAAR HLCCKPRKKC VIPYVDPDKK RPIRCFPGDQ SCPISTDCLP 60
61 ALENSESFSN LTNAIDVMFF CCHTVSIFSC PDGASPFLDP NSGQPATCLA SNPFSCPAEH 120
121 SCTALMDGST ACCPIQTPLC VEALVSDDGS PKTCLGWDDN TTCPQGKCQK AMDGVYYCCR 180
181 PPMMILQNNA PIVPQVEGVS DRVTEYIACS LGILYTDFVK PKKKRQPEYL KLLRDRRASK 240
241 LD
|
| Detection Method: | |
| Confidence: | 5.221849 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
