YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG6999-PA

General Information:
Name(s) found: CG6999-PA / FBpp0071225 [FlyBase]
Description(s) found:
Found 26 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG6999 (CG6999, FBgn0030085). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:8982400..8983347. It has the cytological map location 8C8. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: nucleic acid binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. No alleles are reported. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    Molecular Function: nucleic acid binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEETKLDE ARWGKPQTKE GESANGIANP SNDDKKELAN FKATFNSWAP EKKREKMHKV  60
   61 GVILISNIPK DMDGDCLKEI MNLHSVVGRV YVQPETLSSF KTKKNMRKGW VEFISKSGAK 120
  121 KIALELNNKP ITDGKSSRFR GLLWKMKFLP RFKWYYLTDR MDYELAVCKV RVWSQARKRA 180
  181 TFWYDPDQME YFKKQVKKMK KMKKVKEAEM ATRNAEMAAK KAEMAAKKLK KSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..59] PSI-BLAST 18.0 Poly(A)-binding protein
    2 View Details [60..233] PSI-BLAST 23.522879 Hu antigen C (Huc)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
    		• 2.83802439076672 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.69629099229571 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • snRNA binding
    		•  0.249682711188639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle