YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0305870, sdt-PB

General Information:
Name(s) found: FBpp0305870 [FlyBase]
sdt-PB / FBpp0088916 [FlyBase]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • type=protein; loc=X:join(8117866..8117899,8117989..8118080,8118818..8120116,8121904..8122131,8129622..8129853,8129915..8131202,8131265..8131461,8131843..8131974,8132040..8132221,8132285..8132479); ID=FBpp0305870; name=sdt-PN; parent=FBgn0261873,FBtr0333721; dbxref=REFSEQ:NP_001259327,GB_protein:AGB95172,FlyBase:FBpp0305870,FlyBase_Annotation_IDs:CG32717-PN; MD5=8428e645b8bdc28fef0bc1454d72a191; length=1292; release=r5.56; species=Dmel; [FlyBase]
  • The gene stardust is referred to in FlyBase by the symbol Dmel\sdt (CG32717, FBgn0243505). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:8072582..8133487. It has the cytological map location 7D17-7D22. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: establishment or maintenance of neuroblast polarity; zonula adherens assembly; establishment or maintenance of polarity of embryonic epithelium; establishment or maintenance of epithelial cell apical/basal polarity. 53 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; salivary gland; zonula adherens; amnioserosa; embryonic epidermis; photoreceptor cell stalk; trachea; spot adherens junction; macrophage; embryo. It has 7 annotated transcripts and 7 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1292 amino acids

    Gene Ontology:
    Cellular Component: apicolateral plasma membrane [IDA]
    adherens junction [IDA]
    subapical complex [TAS]
    cell-cell adherens junction [NAS]
    cytoplasm [NAS]
    membrane [ISS][NAS]
    septate junction [TAS]
    apical cortex [IDA]
    plasma membrane [ISS]
    apical plasma membrane [IDA][NAS][TAS]
    Biological Process: [NOT]establishment or maintenance of neuroblast polarity [IEP][IMP]
    cell-cell junction assembly [NAS]
    morphogenesis of an epithelium [NAS][TAS]
    zonula adherens assembly [IMP][TAS]
    establishment or maintenance of epithelial cell apical/basal polarity [IEP][IMP][IPI][TAS]
    establishment or maintenance of cell polarity [NAS]
    morphogenesis of a polarized epithelium [TAS]
    establishment or maintenance of polarity of embryonic epithelium [IMP]
    Molecular Function: protein binding [IPI][ISS][TAS]
    guanylate kinase activity [ISS][NAS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTMLSVNQD NGPHREMAVD CPDTFIARNK TPPRYPPPRP PQKHKKSTNT TTTTTITALT  60
   61 NNDHANKMLI VAYHSSHQHE QLQQQHPSKT STTTTTIALD VATQNLYNQK QQNKLEQIEN 120
  121 YENCLQSERN EQHEQQFEQQ KQHQATTAMA ATQVAQQQTP SHKLQATLSS DPNGNSNSNN 180
  181 NSHIVGISSS SSSNNSSITD DFLCVVDGLY QGRKDTASPS SSAFDEVMSK HTLDSFGSIA 240
  241 YRHLHQQHQA TSNGNSSSNT SNTNSNTNSN TNSNSNTNGN TSNNTAVSTK TATVTKTGVS 300
  301 SSNSNSNSLN SSNSSMHTSS SSSGHSSNIA SATSSSSATS SSTVPDDLSL APPGYEVSQQ 360
  361 QQQQHLVATP VTMLLPPMAK HRELPVDVPD SFIEMVKTTP RYPPPAHLSS RGSLLSNGSA 420
  421 STAHTTLSSM GVAPSPVTAT AAAAASASAA CATTAVAAAA VSGVADGDAR RVADELNGNA 480
  481 KPVPPPRDHL RVEKDGRLVN CSPAPQLPDR RAPGNASSGS SGATTHPLQH QQIAQIVEPT 540
  541 LEQLDSIKKY QEQLRRRREE EERIAQQNEF LRNSLRGSRK LKALQDTATP GKAVAQQQQQ 600
  601 ATLATQVVGV ENEAYLPDED QPQAEQIDGY GELIAALTRL QNQLSKSGLS TLAGRVSAAH 660
  661 SVLASASVAH VLAARTAVLQ RRRSRVSGPL HHSSLGLQKD IVELLTQSNT AAAIELGNLL 720
  721 TSHEMEGLLL AHDRIANHTD GTPSPTPTPT PAIGAATGST LSSPVAGPKR NLGMVVPPPV 780
  781 VPPPLAQRGA MPLPRGESPP PVPMPPLATM PMSMPVNLPM SACFGTLNDQ NDNIRIIQIE 840
  841 KSTEPLGATV RNEGEAVVIG RIVRGGAAEK SGLLHEGDEI LEVNGQELRG KTVNEVCALL 900
  901 GAMQGTLTFL IVPAGSPPSV GVMGGTTGSQ LAGLGGAHRD TAVLHVRAHF DYDPEDDLYI 960
  961 PCRELGISFQ KGDVLHVISR EDPNWWQAYR EGEEDQTLAG LIPSQSFQHQ RETMKLAIAE1020
 1021 EAGLARSRGK DGSGSKGATL LCARKGRKKK KKASSEAGYP LYATTAPDET DPEEILTYEE1080
 1081 VALYYPRATH KRPIVLIGPP NIGRHELRQR LMADSERFSA AVPHTSRARR EGEVPGVDYH1140
 1141 FITRQAFEAD ILARRFVEHG EYEKAYYGTS LEAIRTVVAS GKICVLNLHP QSLKLLRASD1200
 1201 LKPYVVLVAP PSLDKLRQKK LRNGEPFKEE ELKDIIATAR DMEARWGHLF DMIIINNDTE1260
 1261 RAYHQLLAEI NSLEREPQWV PAQWVHNNRD ES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..272] MSA 2.215995 View MSA. No confident structure predictions are available.
    3 View Details [273..539] deduced N/A No confident structure predictions are available.
    4 View Details [540..629] deduced N/A No confident structure predictions are available.
    5 View Details [630..688] PSI-BLAST 3.69897 Hetero-tetrameric L27 (Lin-2, Lin-7) domain complexes as organization platforms of supra-molecular assemblies
    6 View Details [689..738] FFAS03 2.77 NMR structure of L27 heterodimer from C. elegans Lin-7 and H. sapiens Lin-2 scaffold proteins
    7 View Details [739..815] PSI-BLAST 5.522879 NMR structure of L27 heterodimer from C. elegans Lin-7 and H. sapiens Lin-2 scaffold proteins
    8 View Details [816..928] PSI-BLAST 20.69897 Solution structure of the PDZ domain of Pals1 protein
    9 View Details [929..1292] PSI-BLAST 89.221849 Psd-95; Guanylate kinase-like domain of Psd-95

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • nucleobase, nucleoside, nucleotide kinase activity
    		•  3.18270433521719 bayes_pls_golite062009
  • binding
    		•  2.4093171025758 bayes_pls_golite062009
  • nucleotide kinase activity
    		•  1.9239399157391 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  1.84086757311516 bayes_pls_golite062009
  • guanylate kinase activity
    		•  1.80396483614769 bayes_pls_golite062009
  • protein binding
    		•  1.15557714383339 bayes_pls_golite062009
  • protein domain specific binding
    		•  0.683298345987 bayes_pls_golite062009
  • PDZ domain binding
    		•  0.36419975348392 bayes_pls_golite062009
  • catalytic activity
    		•  0.304516551414824 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.
    8
    Term Confidence Notes
  • binding
    		•  3.2595117613307 bayes_pls_golite062009
  • nucleobase, nucleoside, nucleotide kinase activity
    		•  3.03529700765506 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.83180079733297 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.39826531242265 bayes_pls_golite062009
  • protein binding
    		•  2.35875654816667 bayes_pls_golite062009
  • nucleotide kinase activity
    		•  1.79696347300128 bayes_pls_golite062009
  • guanylate kinase activity
    		•  1.70730560221787 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  1.69528181005421 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.68920668586004 bayes_pls_golite062009
  • signal transducer activity
    		•  1.51162321843898 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.51162321843898 bayes_pls_golite062009
  • protein domain specific binding
    		•  0.64214865642772 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.387065538161985 bayes_pls_golite062009
  • receptor binding
    		•  0.359972518335054 bayes_pls_golite062009
  • actin binding
    		•  0.13059495339034 bayes_pls_golite062009
    9 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle