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Protein Overview: Ykt6-PA

General Information:
Name(s) found: Ykt6-PA / FBpp0071049 [FlyBase]
Description(s) found:
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  • gi|7290852|gb|AAF46294.1| lethal (1) G0155 [Drosophila melanogaster] [NCBI NR]
  • gi|18858025|ref|NP_572423.1| lethal (1) G0155 [Drosophila melanogaster] [NCBI NR]
  • gi|16076824|gb|AAL13360.1| LD34211p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\Ykt6 (CG1515, FBgn0260858). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:7814494..7816006. It has the cytological map location 7C3. Based on sequence similarity, it is predicted to have molecular function</span>: SNAP receptor activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: vesicle-mediated transport. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG1515-PA translation from_gene[CG1515 CG1515 FBgn0029978] seq_release:3 mol_weight=22419 cds_boundaries:(X:7,659,622..7,660,307[+]) aa_length:199 transcript_info:[CG1515-RA seq_release:3] gene_info:[gene symbol:CG1515 FBgn0029978 gene_boundaries:(X:7 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W3M8) CG1515 protein (LD34211P) [DrosMelano7227.FASTAC.txt]
  • (AE003442) CG1515 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1515-PA [Drosophila melanogaster]gi|16076824|gb|AAL13360.1| LD34211p [Drosophila melanogaster]gi|18858025|ref|NP_572423.1| CG1515-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=X:join(7814709..7814833,7814923..7815397); ID=FBpp0071049; name=l(1)G0155-PA; parent=FBgn0026664,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294; MD5=415 [fly-100309-contam.fasta]
  • lethal (1) G0155 CG1515-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD34211p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1515-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(7814709..7814833,7814923..7815397); ID=FBpp0071049; name=l(1)G0155-PA; parent=FBgn0026664,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(7814709..7814833,7814923..7815397); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD34211p OS=Drosophila melanogaster GN=Ykt6 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(7814709..7814833,7814923..7815397); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294,FlyMine:FBpp0071049,modMine:FBpp0071049; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(7920676..7920800,7920890..7921364); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294,FlyMine:FBpp0071049,modMine:FBpp0071049; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(7920676..7920800,7920890..7921364); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294,FlyMine:FBpp0071049,modMine:FBpp0071049; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • LD34211p OS=Drosophila melanogaster GN=Ykt6 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0071049 type=protein; loc=X:join(7920676..7920800,7920890..7921364); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294,FlyMine:FBpp0071049,modMine:FBpp0071049; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(7920676..7920800,7920890..7921364); ID=FBpp0071049; name=Ykt6-PA; parent=FBgn0260858,FBtr0071093; dbxref=FlyBase:FBpp0071049,FlyBase_Annotation_IDs:CG1515-PA,GB_protein:AAF46294.1,REFSEQ:NP_572423,GB_protein:AAF46294,UniProt/TrEMBL:Q9W3M8,FlyMine:FBpp0071049,modMine:FBpp0071049; MD5=415d60d10a2f47d053575c5ab0521355; length=199; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 199 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    transport vesicle [ISS]
    Biological Process: vesicle-mediated transport [IEA][ISS]
    Molecular Function: SNAP receptor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLFALSIF HKGASEARLL KTASDLQSFS FFQRGTVNEF MTFASKTIVE RTQPALRQSV  60
   61 KQDAYMCHVY VRADNLAGVL IADHEYPHRV AHTLITKILD DFTAKVSADQ WPNGTEATIS 120
  121 FDLLPAFLAR YQNPVEADPL TKMQNDLDET KIILKNTIEA VLERGEKLDD MVSKSEKLSL 180
  181 QSKAFYKTAK KTNSCCSFT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 33.522879 Synaptobrevin homolog 1 ykt6
    2 View Details [133..199] PSI-BLAST 15.39794 Synaptobrevin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein-cysteine S-acyltransferase activity
    		•  5.70902768432932 bayes_pls_golite062009
  • protein-cysteine S-palmitoleyltransferase activity
    		•  5.70902768432932 bayes_pls_golite062009
  • S-acyltransferase activity
    		•  2.42277624456482 bayes_pls_golite062009
  • palmitoyltransferase activity
    		•  2.39665981402803 bayes_pls_golite062009
  • SNAP receptor activity
    		•  2.23518960752054 bayes_pls_golite062009
  • clathrin binding
    		•  2.03985651011974 bayes_pls_golite062009
  • binding
    		•  1.76450203501026 bayes_pls_golite062009
  • transporter activity
    		•  1.71943098913274 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.939682472116899 bayes_pls_golite062009
  • hydrolase activity
    		•  0.815544630085919 bayes_pls_golite062009
  • signal recognition particle binding
    		•  0.66489873553532 bayes_pls_golite062009
  • protein binding
    		•  0.590936503990514 bayes_pls_golite062009
  • protein transporter activity
    		•  0.17469233791907 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.131410992694836 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0936690070284361 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0846345824909659 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.0820309452260982 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle