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Protein Overview: RpL6-PA

General Information:
Name(s) found: RpL6-PA / FBpp0085165 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • The gene Ribosomal protein L6 is referred to in FlyBase by the symbol Dmel\RpL6 (CG11522, FBgn0039857). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:27420509..27421967. It has the cytological map location 100C7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle elongation; mitotic spindle organization. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic large ribosomal subunit [ISS]
    Biological Process: mitotic spindle elongation [IMP]
    mitotic spindle organization [IMP]
    translation [IEA]
    Molecular Function: structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIEKAKKV AKSAKKGKKH PVNSYLKGGI LRYSKAQMYK RRALYRLKDK KSPVVEKAKV  60
   61 PIKKSKASYP TKTFVKKRPS KANFSEHKRN TRRNLTPGTV LILLAGRHQG KRVVLLKVLA 120
  121 SGLLLVTGPF ALNSCPLRRV SQRYVIGTSS KVDLGAFKVP EHLNDAYFRR LKAKKDKKTG 180
  181 EADIFAAKKE RFVPNEQRKK DQKEVDAALL KVIKAHPEGK FFAKYLQNMF ALHSSQYPHR 240
  241 MRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] Pfam 29.107905 No description for PF03868.6 was found. No confident structure predictions are available.
    2 View Details [77..168] PSI-BLAST 3.30103 No description for 2joyA was found.
    3 View Details [169..243] Pfam 45.443697 No description for PF01159.10 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.75663213016935 bayes_pls_golite062009
  • structural molecule activity
    		•  9.17485893013108 bayes_pls_golite062009
  • translation elongation factor activity
    		•  2.80478779442574 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.61378960730317 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37728600449241 bayes_pls_golite062009
  • DNA binding
    		•  1.96482107461071 bayes_pls_golite062009
  • binding
    		•  1.64219262839972 bayes_pls_golite062009
  • RNA binding
    		•  1.4457902513736 bayes_pls_golite062009
  • transcription factor activity
    		•  1.22903201558409 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  0.44970112534522 bayes_pls_golite062009
  • translation regulator activity
    		•  0.20179424040045 bayes_pls_golite062009
  • protein binding
    		•  0.196068293929372 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.177099375659271 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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