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Protein Overview: Sry-beta-PA

General Information:
Name(s) found: Sry-beta-PA / FBpp0084922 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • The gene Serendipity Ã?&#142;Ã?² is referred to in FlyBase by the symbol Dmel\Sry-Ã?&#142;Ã?² (CG7938, FBgn0003511). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:25865454..25866753. It has the cytological map location 99D3. There is experimental evidence that it has the molecular function</span>: DNA binding. The biological processes in which it is involved are not known. 8 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 356 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][NAS]
    polytene chromosome interband [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [IDA][NAS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTRPFCFV CGKEKSVGVF QLIEGCIVPG TFKPIKDILK YFEKIINQRL ELLPNSAACR  60
   61 DCLEYLFNYD RLVRNLSQVQ RQIADALLGC RQVEGKAETK QQAAKRARVQ VPAFKIVQAT 120
  121 ALKEPERQPG EEDECEEFMK EEMLDEEFQF SEPDDSMPSS EEEFFTETTE IPCHICGEMF 180
  181 SSQEVLERHI KADTCQKSEQ ATCNVCGLKV KDDEVLDLHM NLHEGKTELE CRYCDKKFSH 240
  241 KRNVLRHMEV HWDKKKYQCD KCGERFSLSW LMYNHLMRHD AEENALICEV CHQQFKTKRT 300
  301 YKHHLRTHQT DRPRYPCPDC EKSFVDKYTL KVHKRVHQPV EKPESAEAKE ATVTFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 16.221849 No description for 2dlqA was found.
    2 View Details [151..356] PSI-BLAST 59.522879 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.27542149084008 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19952417915035 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.42975942698743 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.34049786451995 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle