YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: His2Av-PA, FBpp0...

General Information:
Name(s) found: FBpp0306426 [FlyBase]
His2Av-PA / FBpp0084434 [FlyBase]
Description(s) found:
Found 50 descriptions.
SHOW ALL
  • type=protein; loc=3R:join(22692815..22692817,22693131..22693208,22693391..22693504,22694078..22694308); ID=FBpp0306426; name=His2Av-PB; parent=FBgn0001197,FBtr0334311; dbxref=FlyBase:FBpp0306426,FlyBase_Annotation_IDs:CG5499-PB,REFSEQ:NP_001262997,GB_protein:AGB96377; MD5=676bf5e5c89ab8fb7409c747b9e0392d; length=141; release=r5.56; species=Dmel; [FlyBase]
  • The gene Histone H2A variant is referred to in FlyBase by the symbol Dmel\His2Av (CG5499, FBgn0001197). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:22692653..22694630. It has the cytological map location 97D3. There is experimental evidence that it has the molecular function</span>: SUMO binding. There is experimental evidence that it is involved in the biological process</span>: cellular response to DNA damage stimulus. 33 alleles are reported. The phenotypes of these alleles are annotated with: eye; anterior crossvein; tarsal segment. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 141 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    polytene chromosome [IDA]
    nucleus [IDA]
    chromosome [IDA]
    nucleosome [IEA][NAS]
    Biological Process: chromatin assembly or disassembly [NAS]
    response to DNA damage stimulus [IMP]
    nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA][NAS]
    SUMO binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGKAGKDS GKAKAKAVSR SARAGLQFPV GRIHRHLKSR TTSHGRVGAT AAVYSAAILE  60
   61 YLTAEVLELA GNASKDLKVK RITPRHLQLA IRGDEELDSL IKATIAGGGV IPHIHKSLIG 120
  121 KKEETVQDPQ RKGNVILSQA Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 45.0 Histone H2A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle