YRC Public Data Repository - Protein Structure Prediction

Protein:	His2Av-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for His2Av-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|68432331 - gi\|68432331\|ref\|XP_690287.1\| PREDICTED: similar to ReO_6 [Danio rerio]	204.0	[0..1]	[129..288]
gi\|73955042 - gi\|73955042\|ref\|XP_853256.1\| PREDICTED: similar to Histone H2A.x (H2a/x) [Canis familiaris]	190.0	[0..5]	[141..102]
gi\|125773407, gi... - gi\|54637696\|gb\|EAL27098.1\| GA18930-PA [Drosophila pseudoobscura], gi\|125773407\|ref\|XP_001357962.1\| G...	189.0	[0..2]	[141..2]
gi\|109066680 - gi\|109066680\|ref\|XP_001093992.1\| PREDICTED: similar to H2A histone family, member V isoform 1 [Macac...	189.0	[0..1]	[128..187]
gi\|114595343 - gi\|114595343\|ref\|XP_517363.2\| PREDICTED: hypothetical protein [Pan troglodytes]	188.0	[0..2]	[126..272]
gi\|109500010 - gi\|109500010\|ref\|XP_001065720.1\| PREDICTED: similar to H2A histone family, member V isoform 1 [Rattu...	185.0	[0..1]	[128..136]
gi\|50728596 - gi\|50728596\|ref\|XP_416195.1\| PREDICTED: similar to histone 2, H2ac [Gallus gallus]	184.0	[0..1]	[131..222]
gi\|76612869 - gi\|76612869\|ref\|XP_871733.1\| PREDICTED: similar to histone H2A [Bos taurus]	183.0	[0..1]	[132..61]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGKAGKDS GKAKAKAVSR SARAGLQFPV GRIHRHLKSR TTSHGRVGAT AAVYSAAILE  60
   61 YLTAEVLELA GNASKDLKVK RITPRHLQLA IRGDEELDSL IKATIAGGGV IPHIHKSLIG 120
  121 KKEETVQDPQ RKGNVILSQA Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1f66C
Description:	Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: