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Protein Overview: CG5948-PA

General Information:
Name(s) found: CG5948-PA / FBpp0084313 [FlyBase]
Description(s) found:
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  • gi|7301400|gb|AAF56526.1| CG5948 [Drosophila melanogaster] [NCBI NR]
  • gi|24650184|ref|NP_651440.1| CG5948 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5948 (CG5948, FBgn0039386). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:21721602..21722816. It has the cytological map location 96F6-96F7. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: metal ion binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: oxidation reduction; superoxide metabolic process. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG5948-PA translation from_gene[CG5948 CG5948 FBgn0039386] seq_release:3 mol_weight=28133 cds_boundaries:(3R:21,710,967..21,712,178[+]) aa_length:270 transcript_info:[CG5948-RA seq_release:3] gene_info:[gene symbol:CG5948 FBgn0039386 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VBK8) CG5948 protein (EC 1.15.1.1) (Superoxide dismutase [Cu-Zn]) [DrosMelano7227.FASTAC.txt]
  • (AE003754) CG5948 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5948-PA [Drosophila melanogaster]gi|24650184|ref|NP_651440.1| CG5948-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(21721602..21721862,21722201..21722425,21722490..21722816); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_prot [fly-100309-contam.fasta]
  • CG5948-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(21721602..21721862,21722201..21722425,21722490..21722816); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(21721602..21721862,21722201..21722425,21722490..21722816); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=CG5948 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(21721602..21721862,21722201..21722425,21722490..21722816); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526,FlyMine:FBpp0084313,modMine:FBpp0084313; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(25895880..25896140,25896479..25896703,25896768..25897094); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526,FlyMine:FBpp0084313,modMine:FBpp0084313; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(25895880..25896140,25896479..25896703,25896768..25897094); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526,FlyMine:FBpp0084313,modMine:FBpp0084313; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG5948, isoform A OS=Drosophila melanogaster GN=CG5948 PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0084313 type=protein; loc=3R:join(25895880..25896140,25896479..25896703,25896768..25897094); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526,FlyMine:FBpp0084313,modMine:FBpp0084313; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(25895880..25896140,25896479..25896703,25896768..25897094); ID=FBpp0084313; name=CG5948-PA; parent=FBgn0039386,FBtr0084939; dbxref=FlyBase:FBpp0084313,FlyBase_Annotation_IDs:CG5948-PA,GB_protein:AAF56526.1,REFSEQ:NP_651440,GB_protein:AAF56526,UniProt/TrEMBL:Q9VBK8,FlyMine:FBpp0084313,modMine:FBpp0084313; MD5=260b2aca4a8486decb1a2b5ea6cb3af6; length=270; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 270 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: superoxide metabolic process [IEA]
    oxidation reduction [IEA]
    Molecular Function: metal ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKLILALV IGYGGIFAPG SAQNLLDRLR PVNMTRFDDG IKVVSGTKVK RYERLTVPLG  60
   61 GPVGIPGAAG LLGPLLPPQP SYLGYTYQLV PQWQAGAKLM GDGEGAGVAG MISFVQLPYN 120
  121 SDIRVTINVT GLPPGKHALH IHTFGDLSDG CKSTGGQFPN NFLGNVDTKD DGSISAVFQS 180
  181 IYLQLFGING IVGRSIVIHS KAIDLNTALN AEVFSSSLQA MPNPLAYQNE ENSLGPAIAC 240
  241 GVISIMSTAA SSSGMATAAP APPAMENPEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..270] PSI-BLAST 42.69897 Cu,Zn superoxide dismutase, SOD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • protein phosphatase 2B binding
    		•  13.5719110466797 bayes_pls_golite062009
  • superoxide dismutase activity
    		•  12.1093323949609 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  12.1093323949609 bayes_pls_golite062009
  • chaperone binding
    		•  5.11696266714142 bayes_pls_golite062009
  • superoxide dismutase copper chaperone activity
    		•  4.90125496493753 bayes_pls_golite062009
  • copper ion binding
    		•  4.51765925795625 bayes_pls_golite062009
  • protein phosphatase binding
    		•  3.26481550276071 bayes_pls_golite062009
  • phosphatase binding
    		•  3.1414149853516 bayes_pls_golite062009
  • transition metal ion binding
    		•  2.451533032488 bayes_pls_golite062009
  • binding
    		•  2.28211284921339 bayes_pls_golite062009
  • enzyme binding
    		•  1.82618630359051 bayes_pls_golite062009
  • metal ion binding
    		•  1.79413011653575 bayes_pls_golite062009
  • cation binding
    		•  1.79413011653575 bayes_pls_golite062009
  • ion binding
    		•  1.78699219376941 bayes_pls_golite062009
  • catalytic activity
    		•  1.09233965765942 bayes_pls_golite062009
  • protein binding
    		•  0.916153188966515 bayes_pls_golite062009
  • copper ion transmembrane transporter activity
    		•  0.658369569046781 bayes_pls_golite062009
  • metallochaperone activity
    		•  0.515959593535099 bayes_pls_golite062009
  • copper chaperone activity
    		•  0.412497194733789 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.32642292951469 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.262312399748454 bayes_pls_golite062009
  • zinc ion binding
    		•  0.25600715352161 bayes_pls_golite062009
  • antioxidant activity
    		•  0.240491838042064 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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