YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG5316-PC, CG5316-PB

General Information:
Name(s) found: CG5316-PB / FBpp0083174 [FlyBase]
CG5316-PC / FBpp0083172 [FlyBase]
Description(s) found:
Found 31 descriptions.
SHOW ALL
  • This gene is referred to in FlyBase by the symbol Dmel\CG5316 (CG5316, FBgn0038704). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:15229177..15232016. It has the cytological map location 92A3. Based on sequence similarity, it is predicted to have molecular function</span>: damaged DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: single strand break repair. 8 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG5316 (CG5316, FBgn0038704). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:15229177..15232016. It has the cytological map location 92A3. Based on sequence similarity, it is predicted to have molecular function</span>: damaged DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: single strand break repair. 8 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 662 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    precatalytic spliceosome [IDA]
    Biological Process: single strand break repair [ISS]
    nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: zinc ion binding [IEA]
    catalytic activity [IEA]
    damaged DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSSALIKD ISKPENLIIS SEIAVVIADK FPKAQHHYLV LPLADIPSIF HLNRSHLSLL  60
   61 EELHLLARNV VEVKGVRWQD FNVGFHAEPS MQRLHLHVIS KDFVSTSLKT KKHWNSFNTE 120
  121 LFVPYTKLYA QLEKENSISR LPKSLKDELL AKPLICNQCE FVARNLPSLK GHLVGHLQDP 180
  181 KSVCQRVRLG NQFFPTAGYR TSELAYCFDF VDFYEYKKQM EVDKLAYIRD ELQRKLNDKR 240
  241 NFLIESDRAV VMKADYPKSQ YHFRVVAKEE FRDITQLTEA QLPLLDHMMD LANQIIEKQK 300
  301 HLESRNFLIG FKVNTFWNRL NLHVISNDFY SMAMKRISHW NSFNTELFMP FQIAYMMLSV 360
  361 QGSIESISEE TYNNLQEKTP LRCNQCEFVT NMLLDLKAHL YQHWQRKEDE RDQKKKVDKI 420
  421 IQMISETKLD EAEAKPKLLN EEEPIQAQPV AAIAQYPNEH LGKPLTPQQQ PGKQQAQNVY 480
  481 DKNINGPSVN MMNQNNPNNP FRNTPHLNRQ SQKPPHPRSG PRGPMAPWTG PRFPCHQQQN 540
  541 RFRPPGFNAC RQPYPPYHSG HQQFPNASSV GGGQTGLPGQ GQGPRPKWNS NKIFNQQNRQ 600
  601 NTVQAQPQAQ NQQTNQQQIQ NSNKNQTPKK KPWKNRLQPV GKVQNQGGAN RDPAPPSNSK 660
  661 PS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 29.221849 Protein kinase C inhibitor-1, PKCI-1
    2 View Details [118..226] FFAS03 3.56 No description for 2yt9A was found.
    3 View Details [227..342] PSI-BLAST 24.522879 HIT family hydrolase from Clostridium thermocellum Cth-393
    4 View Details [343..662] PSI-BLAST 7.522879 No description for 1y0fA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.12315862086587 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.724655038971066 bayes_pls_golite062009
  • catalytic activity
    		•  0.096119422680995 bayes_pls_golite062009
  • protein binding
    		•  0.0635855651106229 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.12315862086587 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.724655038971066 bayes_pls_golite062009
  • catalytic activity
    		•  0.096119422680995 bayes_pls_golite062009
  • protein binding
    		•  0.0635855651106229 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle