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Protein Overview: CG6904-PC, FBpp0...

General Information:
Name(s) found: FBpp0305474 [FlyBase]
CG6904-PB / FBpp0082495 [FlyBase]
CG6904-PC / FBpp0082494 [FlyBase]
Description(s) found:
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  • gi|24646982|ref|NP_731968.1| CG6904, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|23171306|gb|AAN13624.1| CG6904, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|23171305|gb|AAN13623.1| CG6904, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|21357845|ref|NP_650422.1| CG6904, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|15292321|gb|AAK93429.1| LD46952p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0305474; name=GlyS-PD; parent=FBgn0266064,FBtr0333276; dbxref=REFSEQ:NP_001262583,GB_protein:AGB95964,FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6904 (CG6904, FBgn0038293). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:10967562..10973329. It has the cytological map location 88E2. It is reported to have molecular function</span>: glycogen (starch) synthase activity. It is reported to be involved in the biological process</span>: glycogen biosynthetic process. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG6904-PC translation from_gene[CG6904 CG6904 FBgn0038293] seq_release:3 mol_weight=79235 cds_boundaries:(3R:10,967,946..10,970,979[-]) aa_length:689 transcript_info:[CG6904-RC seq_release:3] gene_info:[gene symbol:CG6904 FBgn0038293 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG6904-PB translation from_gene[CG6904 CG6904 FBgn0038293] seq_release:3 mol_weight=79235 cds_boundaries:(3R:10,967,946..10,970,979[-]) aa_length:689 transcript_info:[CG6904-RB seq_release:3] gene_info:[gene symbol:CG6904 FBgn0038293 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG6904-PA translation from_gene[CG6904 CG6904 FBgn0038293] seq_release:3 mol_weight=79235 cds_boundaries:(3R:10,967,946..10,970,979[-]) aa_length:689 transcript_info:[CG6904-RA seq_release:3] gene_info:[gene symbol:CG6904 FBgn0038293 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (AE003707) CG6904 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6904-PC, isoform C [Drosophila melanogaster]gi|23171305|gb|AAN13623.1| CG6904-PB, isoform B [Drosophila melanogaster]gi|15292321|gb|AAK93429.1| LD46952p [Drosophila melanogaster]gi|24646982|ref|NP_731968.1| CG6904-PC [Drosophila melanogaster]gi|2135 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082494; name=CG6904-PC; parent=FBgn0038293,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1 [fly-100309-contam.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082495; name=CG6904-PB; parent=FBgn0038293,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1 [fly-100309-contam.fasta]
  • CG6904-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG6904-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD46952p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082494; name=CG6904-PC; parent=FBgn0038293,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082495; name=CG6904-PB; parent=FBgn0038293,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082494; name=CG6904-PC; parent=FBgn0038293,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082495; name=CG6904-PB; parent=FBgn0038293,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Isoform B of Putative glycogen [starch] synthase OS=Drosophila melanogaster GN=CG6904 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082494; name=CG6904-PC; parent=FBgn0038293,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624,FlyMine:FBpp0082494,modMine:FBpp0082494; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0082495; name=CG6904-PB; parent=FBgn0038293,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(10967925..10968016,10968451..10968586,10968681..10969548,10969988..10970961); ID=FBpp0305474; name=CG6904-PD; parent=FBgn0038293,FBtr0333276; dbxref=FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082494; name=GlyS-PC; parent=FBgn0266064,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624,FlyMine:FBpp0082494,modMine:FBpp0082494; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082495; name=GlyS-PB; parent=FBgn0266064,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0305474; name=GlyS-PD; parent=FBgn0266064,FBtr0333276; dbxref=REFSEQ:NP_001262583,GB_protein:AGB95964,FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082494; name=GlyS-PC; parent=FBgn0266064,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624,FlyMine:FBpp0082494,modMine:FBpp0082494; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082495; name=GlyS-PB; parent=FBgn0266064,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0305474; name=GlyS-PD; parent=FBgn0266064,FBtr0333276; dbxref=REFSEQ:NP_001262583,GB_protein:AGB95964,FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VFC8, Glycogen synthase, isoform D OS=Drosophila melanogaster GN=GlyS PE=1 SV=1 [DROME.fasta.20160308]
  • Isoform of Q9VFC8, Isoform B of Glycogen [starch] synthase OS=Drosophila melanogaster GN=GlyS [DROME.fasta.20160308]
  • FBpp0082494 type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082494; name=GlyS-PC; parent=FBgn0266064,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624,FlyMine:FBpp0082494,modMine:FBpp0082494; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0082495 type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082495; name=GlyS-PB; parent=FBgn0266064,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0305474 type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0305474; name=GlyS-PD; parent=FBgn0266064,FBtr0333276; dbxref=REFSEQ:NP_001262583,GB_protein:AGB95964,FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082494; name=GlyS-PC; parent=FBgn0266064,FBtr0083035; dbxref=FlyBase:FBpp0082494,FlyBase_Annotation_IDs:CG6904-PC,GB_protein:AAN13624.1,REFSEQ:NP_731968,GB_protein:AAN13624,UniProt/TrEMBL:A0A0B4KHJ5,FlyMine:FBpp0082494,modMine:FBpp0082494; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0082495; name=GlyS-PB; parent=FBgn0266064,FBtr0083036; dbxref=FlyBase:FBpp0082495,FlyBase_Annotation_IDs:CG6904-PB,GB_protein:AAN13623.1,REFSEQ:NP_650422,GB_protein:AAN13623,UniProt/TrEMBL:A0A0B4KHJ5; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:complement(join(15144266..15145239,15142959..15143826,15142729..15142864,15142203..15142294)); ID=FBpp0305474; name=GlyS-PD; parent=FBgn0266064,FBtr0333276; dbxref=REFSEQ:NP_001262583,GB_protein:AGB95964,FlyBase:FBpp0305474,FlyBase_Annotation_IDs:CG6904-PD,UniProt/TrEMBL:A0A0B4KHJ5; MD5=4e763850c2248c6a5d84574113031e7f; length=689; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 689 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRFSRVES GADLKDYFDR GDIASRENRW NFEVAWEVAN KVGGIYTVIR SKAYVSTEEM  60
   61 GEQLCMMGPY KEHCARTEME EMEFPRGNPL LDAVNSLRSR GYKIHTGRWL VDGNPQLILF 120
  121 DIGSAAWKLD QFKSEMWEKC HIGIPHLDIE TNDAIILGFM IAEFLEEFRN FAVTYSQNNE 180
  181 LSAPRIVAHF HEWQAGVGLI VLRTRLVEIA TVFTTHATLL GRYLCAGNTD FYNNLDKFAV 240
  241 DEEAGKRQIY HRYCLERGAT HLAHVFTTVS EITGYEAEHL LKRKPDIITP NGLNVKKFSA 300
  301 IHEFQNLHAV AKEKINEFVR GHFYGHIDFD LDKTLYFFIA GRYEFGNKGA DIFIEALARL 360
  361 NAMLKHEKPD TTVVAFLIFP TKTNNFNVDS LRGHAVIKQL RDTINNVQQA VGKRMFDTCL 420
  421 QGNIPNADDL LQKDDLVKIK RCMFAMQRDS MPPVTTHNVA DDWNDPVLSS IRRCHLFNSR 480
  481 HDRVKMVFHP EFLTSTNPLF GIDYEEFVRG CHLGVFPSYY EPWGYTPAEC TVMGIPSVTT 540
  541 NLSGFGCFME EHISDPKSYG IYIVDRRYIG LENSVQQLSS FMMEFSRLNR RQRIIQRNRT 600
  601 ERLSDLLDWR TLGIYYRQAR VKALQAVYPD YVDELSLYGS KNNLIFSRPH SEPPSPTSSR 660
  661 HTTPAPSVHG SDDEDSVDEE TELKELGIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..474] PSI-BLAST 50.522879 Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP
    2 View Details [475..689] PSI-BLAST 13.69897 No description for 2gejA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glycogen phosphorylase activity
    		•  5.43556332287206 bayes_pls_golite062009
  • phosphorylase activity
    		•  4.4363209226962 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  3.70184884300914 bayes_pls_golite062009
  • catalytic activity
    		•  2.65148466065976 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.62403914335522 bayes_pls_golite062009
  • glucosyltransferase activity
    		•  2.48423599937201 bayes_pls_golite062009
  • UDP-glucosyltransferase activity
    		•  2.22592863643386 bayes_pls_golite062009
  • transferase activity
    		•  2.18054407163329 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  2.13085705769565 bayes_pls_golite062009
  • UDP-N-acetylglucosamine 2-epimerase activity
    		•  1.55280519670033 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.974556371594238 bayes_pls_golite062009
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•  0.849686864309466 bayes_pls_golite062009
  • carbohydrate phosphatase activity
    		•  0.78952375993773 bayes_pls_golite062009
  • binding
    		•  0.399722153246393 bayes_pls_golite062009
  • mannosyltransferase activity
    		•  0.253888301381021 bayes_pls_golite062009
  • protein binding
    		•  0.198267161626932 bayes_pls_golite062009
  • sugar binding
    		•  0.14686473522482 bayes_pls_golite062009
  • drug binding
    		•  0.102804615007901 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle