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Protein Overview: stumps-PA

General Information:
Name(s) found: stumps-PA / FBpp0082417 [FlyBase]
Description(s) found:
Found 13 descriptions.
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  • The gene stumps is referred to in FlyBase by the symbol Dmel\stumps (CG31317, FBgn0020299). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:10402941..10433804. It has the cytological map location 88C6-88C9. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: tracheal outgrowth, open tracheal system; oogenesis; open tracheal system development; mesoderm development. 27 alleles are reported. The phenotypes of these alleles are annotated with 19 unique terms, many of which group under: organ system; primordium; anatomical structure; portion of tissue; nervous system; germ layer; embryonic nervous system; tracheal system; embryonic/larval tracheal system; embryonic/larval dorsal branch; embryonic pericardial cell; midgut constriction; egg; circulatory system; multi-cell-component structure. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1146 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [NAS][TAS]
    intracellular [TAS]
    Biological Process: morphogenesis of a branching structure [NAS]
    heart development [NAS]
    epithelial cell migration, open tracheal system [TAS]
    primary branching, open tracheal system [TAS]
    mesodermal cell migration [TAS]
    oogenesis [IMP]
    mesoderm migration [NAS]
    mesoderm development [IEP]
    fibroblast growth factor receptor signaling pathway [NAS][TAS]
    tracheal outgrowth, open tracheal system [IMP]
    gastrulation [NAS]
    open tracheal system development [IMP][NAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGSPRGSF NSLAGYPQHA IELQTMNMYR QRSANSHSEF RERLNSCNET HSSQCPGGGG  60
   61 ASVAGDHDEV FNPLTSPTSS KSHRHHTLPS GGTRRHSLGN WAQHQHQQQH QQNSGAMGLG 120
  121 SPDEVPSMMA PRPPLLSPNK FRGSSHRRRD NCGNVNNTSG SSASGFLGSP GYNMDDILII 180
  181 TAKHSERAYL RATFLKNHFD KITKQRGRKP FNFLHIKIDD GPFSEEIAHK YQNTALQIVI 240
  241 LCPALLALPH SFLMTQLSAI IRVEKVLAIL LDVSEEKVKE MHKSALPSYY KWRRCVVRDN 300
  301 DQVQISNILG IATDILGRAL CQRPPCQDSS GGGGGGLSRS FSSCTEGFTV LPKKVKLGQN 360
  361 KVVALLAEPL EKNDTLKLQV EKSGELIELR NFKCRNPYTL QFNIPEACME ISTMIEIRIE 420
  421 KNNKSLGARP IKCESRLREL EQLLRIEDSP IEFMCHALGI GPVERDALDQ HLLQCFQRNM 480
  481 PPNFHLLSGP SERQPHFFTR LESSPEEYPT LLHFAARWGL NRLCIQLMEC PGGDTACGVR 540
  541 NCAGRTPAEL AEQEGHHKLA QNIVSFAEFH ELTTMYHYFK GVTPPGESCP KPSANVVIEA 600
  601 HPVKAGKTNK PPKELPTAEY MEMSSGSERE NTPEVRTKTE TLAISNLNYI SVETEDENLQ 660
  661 ASVAEKKVES EKKLPEAGNQ PGPEKTTNEL RINEPPYYQS KEQNQQPKEL KNQSKSLDEV 720
  721 DAAPLYQTDK FSQECSQLLE NQLGNDYVLQ PSNVPVAQDD GNYLFQPSNR PVEEPLRLNR 780
  781 CTNRQPGYGT LKRSASDASA ASHTRSNADD ELAEIMHDFK NNVLSIRDVE VLVERWKHRN 840
  841 DVQQSFREKQ DQIDQLRREY ERIQEQVKSH LKRETPFERI KKFFLRSKTP GGNDSLLDET 900
  901 KSSIATSCSF KSAGGVSSSA GAGRPISSLS LQSVSSSSSS SGRLSTGSNC SGASLGDSGT 960
  961 HSDHEDRRFP HCRMMDNYMV PPTPRPVFTP SSTPGDERHQ IVFPSPMSSC QRLNTPTSPT1020
 1021 GSEHYQMFPS NIPVYGSQPL VGSQSSNYLN TIMEAKEQAE TQHYQNQNGV TLQPIKLNER1080
 1081 SNIIYGKLTK SSSASGCSSF KPKQIPVPCP QVGSIEVQAE VYQNVGDVAP EKDSKAEEET1140
 1141 PNYMNC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] deduced N/A No confident structure predictions are available.
    2 View Details [165..314] MSA 1.034954 View MSA. No confident structure predictions are available.
    3 View Details [315..692] PSI-BLAST 25.0 Ankyrin-R
    4 View Details [693..946] MSA 1.346991 View MSA. No confident structure predictions are available.
    5 View Details [947..1146] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.96927469603571 bayes_pls_golite062009
  • protein binding
    		•  1.64872738860757 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle