Protein Overview: Rbp4-PA

General Information:
Name(s) found:	Rbp4-PA / FBpp0082318 [FlyBase]
Description(s) found: Found 21 descriptions. SHOW ALL	The gene RNA-binding protein 4 is referred to in FlyBase by the symbol Dmel\Rbp4 (CG9654, FBgn0010258). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:9480275..9482116. It has the cytological map location 87F7. There is experimental evidence that it has the molecular function</span>: single-stranded RNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: mRNA processing. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
Organism:	Drosophila melanogaster
Length:	428 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA]
Biological Process:	mRNA processing [ISS]
Molecular Function:	nucleotide binding [IEA] single-stranded RNA binding [IDA] mRNA binding [ISS][NAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGNCASSA CLGDCKGDGK TAIKEEGYEH LRKIFIGGLS TQTTVETLRG FFSQFGIVAD  60
   61 AVVLRDPVSN HSRGFGFVTY VDPKSVEIVQ RARPHTIDNK IVETKHALPR QDFKRGGGVG 120
  121 SVVGSFGCEA GFMNSKRIFL GGLKEYHDEN IVREYFSQFG PVASVKLLMD RETGRQRAFG 180
  181 FLEFVDPSSA EKALAPRKHW ILQTLVEVKR STQKADRRFR FPIFSSVRAG YIPPQPATAD 240
  241 SYNYNNPNYN PYLAQSVLPP SAFTNGWAHY VIPMAPKPTP GQNMAASLPS QQLAEHSLNG 300
  301 HGPDMWSSYP KTGIYSAQEW TSSKVAEWGP KAGHKHAQTS TNDRAKIDLK ELQAATFNNK 360
  361 LDFGARGDAD RMSGAGLGLG LTGGAAVGVG AIKKWPTQDY KVFKPAKSPT NGVIPKIGKE 420
  421 ATTPPYGI

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
RNA binding	4.63987691433124	bayes_pls_golite062009
mRNA binding	3.54495985180603	bayes_pls_golite062009
nucleic acid binding	2.94848701812661	bayes_pls_golite062009
binding	2.41127885655304	bayes_pls_golite062009
	1.71820051628117	bayes_pls_golite062009
single-stranded RNA binding	1.46469774223879	bayes_pls_golite062009
poly-pyrimidine tract binding	0.862661444935922	bayes_pls_golite062009
protein binding	0.42571879933058	bayes_pls_golite062009
mRNA 3'-UTR binding	0.366474768004238	bayes_pls_golite062009
transcription regulator activity	0.0376525951141159	bayes_pls_golite062009
DNA binding	0.017779252073686	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.81

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..224]	PSI-BLAST	55.522879	Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
2	View Details	[225..428]	PSI-BLAST	6.522879	Sec24

Protein Overview: Rbp4-PA

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: