| Protein: | Rbp4-PA |
| Organism: | Drosophila melanogaster |
| Length: | 428 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rbp4-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
248.0 | [0..3] | [424..154] |
|
Region A: Residues: [1-224] |
1 11 21 31 41 51
| | | | | |
1 MDAGNCASSA CLGDCKGDGK TAIKEEGYEH LRKIFIGGLS TQTTVETLRG FFSQFGIVAD 60
61 AVVLRDPVSN HSRGFGFVTY VDPKSVEIVQ RARPHTIDNK IVETKHALPR QDFKRGGGVG 120
121 SVVGSFGCEA GFMNSKRIFL GGLKEYHDEN IVREYFSQFG PVASVKLLMD RETGRQRAFG 180
181 FLEFVDPSSA EKALAPRKHW ILQTLVEVKR STQKADRRFR FPIF
|
| Detection Method: |  |
| Confidence: | 55.522879 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| nucleic acid binding | 2.94848701812661 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| 1.71820051628117 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.862661444935922 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.366474768004238 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0376525951141159 | bayes_pls_golite062009 |
| DNA binding | 0.017779252073686 | bayes_pls_golite062009 |
|
Region A: Residues: [225-428] |
1 11 21 31 41 51
| | | | | |
1 SSVRAGYIPP QPATADSYNY NNPNYNPYLA QSVLPPSAFT NGWAHYVIPM APKPTPGQNM 60
61 AASLPSQQLA EHSLNGHGPD MWSSYPKTGI YSAQEWTSSK VAEWGPKAGH KHAQTSTNDR 120
121 AKIDLKELQA ATFNNKLDFG ARGDADRMSG AGLGLGLTGG AAVGVGAIKK WPTQDYKVFK 180
181 PAKSPTNGVI PKIGKEATTP PYGI
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
