YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: yrt-PA

General Information:
Name(s) found: yrt-PA / FBpp0082261 [FlyBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • The gene yurt is referred to in FlyBase by the symbol Dmel\yrt (CG9764, FBgn0004049). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:9254589..9260704. It has the cytological map location 87E11. Based on sequence similarity, it is predicted to have molecular function</span>: cytoskeletal protein binding. There is experimental evidence that it is involved in the biological process</span>: dorsal closure; amnioserosa maintenance; germ-band shortening; head involution. 20 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/first instar larval cuticle; dorsal ridge; embryonic head; macrochaeta; amnioserosa; ommatidium. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 972 amino acids

    Gene Ontology:
    Cellular Component: cytoskeleton [IEA]
    cytoplasm [IEA]
    extrinsic to membrane [IEA]
    Biological Process: dorsal closure [IMP]
    germ-band shortening [IMP]
    head involution [IMP]
    amnioserosa maintenance [IMP]
    Molecular Function: cytoskeletal protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFLSRRKV RNNYVDNSRE GGGATSSAVG VAGGGGAITS GGSSQIKPQR IVVNKNKIDC  60
   61 RVILLDNTDL SIELSKKALG SFLYEQVFYA LDIIEKDYFG LQFMDANHVK HWLDPTKPIK 120
  121 KQVKIGPPYT FRLKVKFYSS EPNTLREELT RYLFFLQLKQ DLLEGRLDCP EDKATELCAL 180
  181 ALQSELGDYD NQEHSAATVS EFRFVPEQTE DLEIAILDEY KTCRGLTPAQ AETAFLNKAK 240
  241 WLDMYGVDMH TVLGKDGCEY HLGLTPTGIL VFERDQKIGL FFWPKISKLD FKKKKLTLIV 300
  301 IEDDDEGREQ EHTFVFRLYN EKACKHLWKC AVEHHTFFRL RAPVKGPSAR QNFFRMGSRF 360
  361 RYSGRTEFQT TQQSRARRTV QFERRPSQRF ASRQSHLLRE RQKASQEAAV SAVASVNARA 420
  421 AAAAAAAAAS QSPAPATPLV SSQVSTPTPN NDNNNDAFDS LISTDQFITV TPSPSVLTVI 480
  481 QNSAIIEPDA ACSGSISSSS QAAANFASLG RNSLKSNFSN EDPAYSKIGS IGKASGLTVK 540
  541 LDPDYTPPYS PNATKNFDET NPFRNATSSH HGSFGKASIS SGQLSVKSGL SDKDRELDSL 600
  601 LKSIVKDPSP SVLANEAIND ANSIRVTINK TFDMDHNTET LKRLSNANEK PNNQVKLANV 660
  661 NTTALPPGNI KCNILKARVE EELGAGGNAK LTNQMFVPAA HSSNMHTSNT NSSNNHAHSD 720
  721 GPDSLNATYI SVGGDKLTLS IPEQKPSTGS SSSSSTSSTA TTTTNGNGPY SNATFVSGFS 780
  781 APLTPPSSLP ANLNNTGSGC NTTLTSVTTI STPSSPTATV STTASESVAP ALSNASAAEI 840
  841 LINEIFINNI INNNASGSIT AETAAKPAGS STPSAGTLLF STLSEQERLE SQKTNQQMNQ 900
  901 SLNLNQNHSE VDAPPSEKKT PSNYPDSSRI PFPSSSNSKD MVSPWLVSSE VVSAPKGRES 960
  961 AIIRKSVITT QL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..343] PSI-BLAST 129.0 No description for 2he7A was found.
    2 View Details [344..562] deduced N/A No confident structure predictions are available.
    3 View Details [563..649] deduced N/A No confident structure predictions are available.
    4 View Details [650..760] deduced N/A No confident structure predictions are available.
    5 View Details [761..972] MSA 6.258994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle