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Protein Overview: CG6293-PA, FBpp0...

General Information:
Name(s) found: FBpp0307980 [FlyBase]
CG6293-PA / FBpp0081718 [FlyBase]
Description(s) found:
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  • gi|7299325|gb|AAF54519.1| CG6293 [Drosophila melanogaster] [NCBI NR]
  • gi|226372959|gb|ACO52091.1| MIP03523p [Drosophila melanogaster] [NCBI NR]
  • gi|21356175|ref|NP_649994.1| CG6293 [Drosophila melanogaster] [NCBI NR]
  • gi|17862476|gb|AAL39715.1| LD30822p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:complement(6134288..6134839,6134904..6135420,6135621..6136240,6137184..6137216); ID=FBpp0307980; name=CG6293-PB; parent=FBgn0037807,FBtr0337051; dbxref=REFSEQ:NP_001262459,GB_protein:AGB95841,FlyBase:FBpp0307980,FlyBase_Annotation_IDs:CG6293-PB; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6293 (CG6293, FBgn0037807). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:6133984..6137317. It has the cytological map location 86A7. Based on sequence similarity, it is predicted to have molecular function</span>: L-ascorbate:sodium symporter activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: transmembrane transport. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6293-PA translation from_gene[CG6293 CG6293 FBgn0037807] seq_release:3 mol_weight=62438 cds_boundaries:(3R:6,134,309..6,137,234[-]) aa_length:573 transcript_info:[CG6293-RA seq_release:3] gene_info:[gene symbol:CG6293 FBgn0037807 gene_boundaries:(3R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VH02) CG6293 protein (LD30822p) [DrosMelano7227.FASTAC.txt]
  • (AE003686) CG6293 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6293-PA [Drosophila melanogaster]gi|17862476|gb|AAL39715.1| LD30822p [Drosophila melanogaster]gi|21356175|ref|NP_649994.1| CG6293-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:complement(6134288..6134839,6134904..6135420,6135621..6136240,6137184..6137216); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ: [fly-100309-contam.fasta]
  • CG6293-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD30822p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(6134288..6134839,6134904..6135420,6135621..6136240,6137184..6137216); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(6134288..6134839,6134904..6135420,6135621..6136240,6137184..6137216); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG6293 OS=Drosophila melanogaster GN=CG6293-RA PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(6134288..6134839,6134904..6135420,6135621..6136240,6137184..6137216); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519,FlyMine:FBpp0081718,modMine:FBpp0081718; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG6293 OS=Drosophila melanogaster GN=CG6293-RA PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519,FlyMine:FBpp0081718,modMine:FBpp0081718; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0307980; name=CG6293-PB; parent=FBgn0037807,FBtr0337051; dbxref=REFSEQ:NP_001262459,GB_protein:AGB95841,FlyBase:FBpp0307980,FlyBase_Annotation_IDs:CG6293-PB; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519,FlyMine:FBpp0081718,modMine:FBpp0081718; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0307980; name=CG6293-PB; parent=FBgn0037807,FBtr0337051; dbxref=REFSEQ:NP_001262459,GB_protein:AGB95841,FlyBase:FBpp0307980,FlyBase_Annotation_IDs:CG6293-PB; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG6293, isoform A OS=Drosophila melanogaster GN=CG6293-RA PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0081718 type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519,FlyMine:FBpp0081718,modMine:FBpp0081718; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0307980 type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0307980; name=CG6293-PB; parent=FBgn0037807,FBtr0337051; dbxref=REFSEQ:NP_001262459,GB_protein:AGB95841,FlyBase:FBpp0307980,FlyBase_Annotation_IDs:CG6293-PB; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0081718; name=CG6293-PA; parent=FBgn0037807,FBtr0082240; dbxref=FlyBase:FBpp0081718,FlyBase_Annotation_IDs:CG6293-PA,GB_protein:AAF54519.1,REFSEQ:NP_649994,GB_protein:AAF54519,UniProt/TrEMBL:Q9VH02,FlyMine:FBpp0081718,modMine:FBpp0081718; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:complement(join(10311462..10311494,10309899..10310518,10309182..10309698,10308566..10309117)); ID=FBpp0307980; name=CG6293-PB; parent=FBgn0037807,FBtr0337051; dbxref=REFSEQ:NP_001262459,GB_protein:AGB95841,FlyBase:FBpp0307980,FlyBase_Annotation_IDs:CG6293-PB,UniProt/TrEMBL:Q9VH02; MD5=f0c2c165558475d860c28cc364f9051a; length=573; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: transmembrane transport [IEA]
    Molecular Function: L-ascorbate:sodium symporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELNNVTIED ATDASKSYSQ AANTPPSNEK PKPQLLYAIN DNPPWYLSIF LAFQHYLTMI  60
   61 GAIVSIPFIL TPALCMSDED ANRGIIISTM IFVTGIVTYF QATWGVRLPI VQGGTISFLV 120
  121 PTLAILALPQ WKCPEQAVMD AMDEAEREEL WQVRMRELSG AIAVSAMVQV ILGYTGLVGK 180
  181 ILKYVTPLTI VPTVSLVGLT LFEHAAETAS KHWGIAVGTT GMLTLFSQIM SNVPVPILAY 240
  241 RKGHGLEIRQ FQLFRLFPVL LTIMIMWGLC GILTATDVFP PSHPSRTDVR LNVLTSAKWF 300
  301 YVPYPGQFGW PSVTLSGVLG MLAGVLACTV ESLSYYPTVS QMSGAHSPPL HAINRGIGTE 360
  361 GFGTVLAGLW GAGNGTNTFG ENVGAIGVTK IGSRRVIQWA ALIMVLQGVI GKFGAIFILI 420
  421 PDSVVGGIFC VMFGMIIAFG LSTLQYVDLR SARNLYILGL SIFFPMVLCR WMQKNPGAID 480
  481 TGNKTVDSTL SVLLGTTILV GGVLGCLLDN IIPGTPEERG LIDWANEMPL GDDNVNDGTA 540
  541 TDYDFPLGMD AIRRWKWTYY IPFMPTYKLQ KQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] MSA 6.81399 View MSA. No confident structure predictions are available.
    2 View Details [185..303] deduced N/A No confident structure predictions are available.
    3 View Details [304..573] MSA 7.825997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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