YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6293-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.61
Transmembrane Helix	52	75	0.86
Cytoplasmic	76	83	0.53
Transmembrane Helix	84	103	0.93
Non-Cytoplasmic	104	109	0.49
Transmembrane Helix	110	131	0.76
Cytoplasmic	132	157	0.47
Transmembrane Helix	158	178	0.82
Non-Cytoplasmic	179	212	0.41
Transmembrane Helix	213	235	0.81
Cytoplasmic	236	252	0.81
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	308	0.90
Transmembrane Helix	309	330	0.87
Cytoplasmic	331	395	0.73
Transmembrane Helix	396	419	0.83
Non-Cytoplasmic	420	423	0.64
Transmembrane Helix	424	446	0.89
Cytoplasmic	447	453	0.68
Transmembrane Helix	454	473	0.91
Non-Cytoplasmic	474	489	0.73
Transmembrane Helix	490	512	0.86
Cytoplasmic	513	573	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELNNVTIED ATDASKSYSQ AANTPPSNEK PKPQLLYAIN DNPPWYLSIF LAFQHYLTMI  60
   61 GAIVSIPFIL TPALCMSDED ANRGIIISTM IFVTGIVTYF QATWGVRLPI VQGGTISFLV 120
  121 PTLAILALPQ WKCPEQAVMD AMDEAEREEL WQVRMRELSG AIAVSAMVQV ILGYTGLVGK 180
  181 ILKYVTPLTI VPTVSLVGLT LFEHAAETAS KHWGIAVGTT GMLTLFSQIM SNVPVPILAY 240
  241 RKGHGLEIRQ FQLFRLFPVL LTIMIMWGLC GILTATDVFP PSHPSRTDVR LNVLTSAKWF 300
  301 YVPYPGQFGW PSVTLSGVLG MLAGVLACTV ESLSYYPTVS QMSGAHSPPL HAINRGIGTE 360
  361 GFGTVLAGLW GAGNGTNTFG ENVGAIGVTK IGSRRVIQWA ALIMVLQGVI GKFGAIFILI 420
  421 PDSVVGGIFC VMFGMIIAFG LSTLQYVDLR SARNLYILGL SIFFPMVLCR WMQKNPGAID 480
  481 TGNKTVDSTL SVLLGTTILV GGVLGCLLDN IIPGTPEERG LIDWANEMPL GDDNVNDGTA 540
  541 TDYDFPLGMD AIRRWKWTYY IPFMPTYKLQ KQS