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Protein Overview: FBpp0305960, CG1...

General Information:
Name(s) found: FBpp0305960 [FlyBase]
CG10092-PA / FBpp0081249 [FlyBase]
Description(s) found:
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  • gi|28571570|ref|NP_649745.3| CG10092 [Drosophila melanogaster] [NCBI NR]
  • gi|28381174|gb|AAF54156.2| CG10092 [Drosophila melanogaster] [NCBI NR]
  • gi|19528429|gb|AAL90329.1| RE18459p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0305960; name=CG10092-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB,REFSEQ:NP_001262351,GB_protein:AGB95733; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG10092 (CG10092, FBgn0037526). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:3712806..3715058. It has the cytological map location 84E4. Based on sequence similarity, it is predicted to have molecular function</span>: arginine-tRNA ligase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: arginyl-tRNA aminoacylation. 15 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG10092-PA translation from_gene[CG10092 CG10092 FBgn0037526] seq_release:3 mol_weight=68327 cds_boundaries:(3R:3,712,844..3,714,983[+]) aa_length:594 transcript_info:[CG10092-RA seq_release:3] gene_info:[gene symbol:CG10092 FBgn0037526 gene_boundarie [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8SXK2) RE18459p (CG10092-PA) [DrosMelano7227.FASTAC.txt]
  • CG10092-PA [Drosophila melanogaster]gi|19528429|gb|AAL90329.1| RE18459p [Drosophila melanogaster]gi|28571570|ref|NP_649745.3| CG10092-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54 [fly-100309-contam.fasta]
  • CG10092-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE18459p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG10092 OS=Drosophila melanogaster GN=CG10092 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156,FlyMine:FBpp0081249,modMine:FBpp0081249; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(3712829..3712860,3712930..3712999,3713062..3714223,3714285..3714651,3714818..3714971); ID=FBpp0305960; name=CG10092-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156,FlyMine:FBpp0081249,modMine:FBpp0081249; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0305960; name=CG10092-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB,REFSEQ:NP_001262351,GB_protein:AGB95733; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156,FlyMine:FBpp0081249,modMine:FBpp0081249; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0305960; name=CG10092-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB,REFSEQ:NP_001262351,GB_protein:AGB95733; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG10092, isoform A OS=Drosophila melanogaster GN=CG10092 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0081249 type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0081249; name=CG10092-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156,FlyMine:FBpp0081249,modMine:FBpp0081249; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0305960 type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0305960; name=CG10092-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB,REFSEQ:NP_001262351,GB_protein:AGB95733; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0081249; name=ArgRS-m-PA; parent=FBgn0037526,FBtr0081752; dbxref=FlyBase:FBpp0081249,FlyBase_Annotation_IDs:CG10092-PA,GB_protein:AAF54156.2,REFSEQ:NP_649745,GB_protein:AAF54156,UniProt/TrEMBL:Q8SXK2,FlyMine:FBpp0081249,modMine:FBpp0081249; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(7887107..7887138,7887208..7887277,7887340..7888501,7888563..7888929,7889096..7889249); ID=FBpp0305960; name=ArgRS-m-PB; parent=FBgn0037526,FBtr0333826; dbxref=FlyBase:FBpp0305960,FlyBase_Annotation_IDs:CG10092-PB,REFSEQ:NP_001262351,GB_protein:AGB95733,UniProt/TrEMBL:Q8SXK2; MD5=cd5d90898b584065e05f9e9d01c0443e; length=594; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 594 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: arginyl-tRNA aminoacylation [IEA]
    Molecular Function: ATP binding [IEA]
    arginine-tRNA ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPHIGLFT YKICNALKEL TERMIRLRQA ICEQLPHLKN ACYALEVPVK KQQLQNSRRP  60
   61 TVEWILPSAF AQQEVELLDS LKKRRFEAYV ENVRIVPSAG RSAAKIEFQL QPQVFVEQLL 120
  121 QTKEIALHPS PFAAEHIVVE YSSPNIAKPF HVGHLRSTII GNVLANLHEH LGYRTTRLNY 180
  181 LGDWGTQFGL LVLGVQLLNV SDKEMQLSPI ETLYKSYVAA NKAAEQRPEI AQQARDLFAA 240
  241 LEGGTDKSMA KKWQQYRNYT IEDLSKVYNR LGVHFDSYEW ESQYSQQQIQ DVLDKLRSAG 300
  301 LLQPEHDGRE IVVVDGRRIP VIKSNGSTLY LARDIAALLE RLSRFQFSRL LYVVDNGQAD 360
  361 HFNALFKTTA ALDDRLSLEQ LQHVKFGRIY GMSTRQGKAI FLKDVLDEAR DIMREKRNIS 420
  421 ATTRENYNLD DEHVCDILGV SAVLVNVLKQ RRQRDHEFSW QQALQVNGDT GIKLQYTHCR 480
  481 LHSLLDNFRD VDLDDIKPDW KHFSTEPADA LDLLYALARF DQSVWQSKEQ LEACVLVNYL 540
  541 FGLCNATSQA LKRLPVKQES SLEKQLQRLL LFHAAKKTLR HGMELLGLRP LNQM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..594] PSI-BLAST 104.0 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.72854650987135 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • binding
    		•  0.485102284225571 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.126511747475258 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle