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Protein Overview: snRNP2-PA

General Information:
Name(s) found: snRNP2-PA / FBpp0081234 [FlyBase]
Description(s) found:
Found 23 descriptions.
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  • The gene snRNP2 is referred to in FlyBase by the symbol Dmel\snRNP2 (CG1249, FBgn0037434). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:2170722..2171642. It has the cytological map location 83E4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: mitotic spindle organization. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 119 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    spliceosomal complex [ISS]
    small nuclear ribonucleoprotein complex [ISS]
    Biological Process: mitotic spindle organization [IMP]
    nuclear mRNA splicing, via spliceosome [IC][ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVKPKSEL TPEELARQEE EEFNTGPLSV LTQSVKNNTQ VLINCRNNKK LLGRVKAFDR  60
   61 HCNMVLENVK EMWTELPRTG KGKKKVKPVN KDRFISKMFL RGDSVILVLR NPLATAAGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 27.69897 D2 core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.44117021254507 bayes_pls_golite062009
  • protein binding
    		•  0.318488892917007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle