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Protein Overview: FBpp0304370, FBp...

General Information:
Name(s) found: FBpp0304370 [FlyBase]
FBpp0304369 [FlyBase]
CG6610-PA / FBpp0076756 [FlyBase]
Description(s) found:
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  • gi|7295386|gb|AAF50703.1| CG6610 [Drosophila melanogaster] [NCBI NR]
  • gi|21358059|ref|NP_648022.1| CG6610 [Drosophila melanogaster] [NCBI NR]
  • gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6610 (CG6610, FBgn0035675). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:6068637..6069358. It has the cytological map location 65A5. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6610-PA translation from_gene[CG6610 CG6610 FBgn0035675] seq_release:3 mol_weight=10058 cds_boundaries:(3L:6,034,948..6,035,357[+]) aa_length:91 transcript_info:[CG6610-RA seq_release:3] gene_info:[gene symbol:CG6610 FBgn0035675 gene_boundaries:(3L: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VRT7) CG6610 protein (RE60135p) [DrosMelano7227.FASTAC.txt]
  • (AE003564) CG6610 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6610-PA [Drosophila melanogaster]gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]gi|21358059|ref|NP_648022.1| CG6610-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AA [fly-100309-contam.fasta]
  • CG6610-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • RE60135p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG6610 OS=Drosophila melanogaster GN=CG6610 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703,FlyMine:FBpp0076756,modMine:FBpp0076756; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG6610 OS=Drosophila melanogaster GN=CG6610 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703,FlyMine:FBpp0076756,modMine:FBpp0076756; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703,FlyMine:FBpp0076756,modMine:FBpp0076756; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • CG6610, isoform A OS=Drosophila melanogaster GN=CG6610 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0076756 type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703,FlyMine:FBpp0076756,modMine:FBpp0076756; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304369 type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304370 type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0076756; name=CG6610-PA; parent=FBgn0035675,FBtr0077048; dbxref=FlyBase:FBpp0076756,FlyBase_Annotation_IDs:CG6610-PA,GB_protein:AAF50703.1,REFSEQ:NP_648022,GB_protein:AAF50703,UniProt/TrEMBL:Q9VRT7,FlyMine:FBpp0076756,modMine:FBpp0076756; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156,UniProt/TrEMBL:Q9VRT7; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:join(6075640..6075688,6075761..6075957,6076023..6076052); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157,UniProt/TrEMBL:Q9VRT7; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [ISS]
    small nuclear ribonucleoprotein complex [ISS]
    U6 snRNP [NAS]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAVPPPSNI STLMPLELVD KCIGSRIHII MKNDKEMVGT LLGFDDFVNM LLDDVTEYEN  60
   61 TPDGRRITKL DQILLNGNNI TMLVPGGELA E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 13.69897 Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
  • protein binding
    		•  0.441246606284457 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle