YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0304370, FBp...
Organism:	Drosophila melanogaster
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0304370, FBp....

Description	E-value	Query Range	Subject Range
gi\|50732968 - gi\|50732968\|ref\|XP_418849.1\| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated [Ga...	95.0	[0..2]	[90..75]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	94.0	[0..2]	[84..142]
gi\|5870130 - gi\|5870130\|gb\|AAD54489.1\| small nuclear ribonucleoprotein B' [Homo sapiens]	94.0	[0..5]	[90..1]
gi\|109123961 - gi\|109123961\|ref\|XP_001115319.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm4 (Gly...	93.0	[0..12]	[91..123]
gi\|116058235 - gi\|116058235\|emb\|CAL53424.1\| glycine rich protein-common tobacco sp\|Q43582\|LSM4_TOBAC Probable U6 sn...	93.0	[0..3]	[89..649]
gi\|47211209 - gi\|47211209\|emb\|CAF90166.1\| unnamed protein product [Tetraodon nigroviridis]	92.0	[0..5]	[90..8]
lsm-5 - small nuclear ribonucleoprotein E (SNRNP-E) like status:Confirmed UniProt:O18694 protein_id:CAB03013...	92.0	[0..2]	[91..1]
gi\|157766272 - gi\|157766272\|ref\|XP_001675479.1\| Hypothetical protein CBG18602 [Caenorhabditis briggsae AF16] gi\|187024824, gi... - gi\|39582859\|emb\|CAE71635.1\| Hypothetical protein CBG18602 [Caenorhabditis briggsae], gi\|187024824\|em...	92.0	[0..2]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAVPPPSNI STLMPLELVD KCIGSRIHII MKNDKEMVGT LLGFDDFVNM LLDDVTEYEN  60
   61 TPDGRRITKL DQILLNGNNI TMLVPGGELA E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	2fwkA
Description:	Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.04681172391952	bayes_pls_golite062009
protein binding	0.441246606284457	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: