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Protein Overview: FBpp0304370, FBp...

General Information:
Name(s) found: FBpp0304370 [FlyBase]
FBpp0304369 [FlyBase]
CG6610-PA / FBpp0076756 [FlyBase]
Description(s) found:
Found 34 descriptions.
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  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304370; name=CG6610-PC; parent=FBgn0035675,FBtr0332060; dbxref=FlyBase:FBpp0304370,FlyBase_Annotation_IDs:CG6610-PC,REFSEQ:NP_001261462,GB_protein:AGB94157; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3L:join(6068740..6068788,6068861..6069057,6069123..6069152); ID=FBpp0304369; name=CG6610-PB; parent=FBgn0035675,FBtr0332059; dbxref=FlyBase:FBpp0304369,FlyBase_Annotation_IDs:CG6610-PB,REFSEQ:NP_001261461,GB_protein:AGB94156; MD5=240dbf43f543b35c6b57d0d945307738; length=91; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6610 (CG6610, FBgn0035675). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:6068637..6069358. It has the cytological map location 65A5. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: nuclear mRNA splicing, via spliceosome. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [ISS]
    small nuclear ribonucleoprotein complex [ISS]
    U6 snRNP [NAS]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAVPPPSNI STLMPLELVD KCIGSRIHII MKNDKEMVGT LLGFDDFVNM LLDDVTEYEN  60
   61 TPDGRRITKL DQILLNGNNI TMLVPGGELA E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 13.69897 Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
  • protein binding
    		•  0.441246606284457 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle