YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CG13890-PA

General Information:
Name(s) found: CG13890-PA / FBpp0072484 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|7292008|gb|AAF47423.1| CG13890 [Drosophila melanogaster] [NCBI NR]
  • gi|24654903|ref|NP_612065.1| CG13890 [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG13890 (CG13890, FBgn0035169). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:851319..852673. It has the cytological map location 61D2. Based on sequence similarity, it is predicted to have molecular function</span>: dodecenoyl-CoA delta-isomerase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: metabolic process. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG13890-PA translation from_gene[CG13890 CG13890 FBgn0035169] seq_release:3 mol_weight=29204 cds_boundaries:(3L:832,071..832,974[+]) aa_length:262 transcript_info:[CG13890-RA seq_release:3] gene_info:[gene symbol:CG13890 FBgn0035169 gene_boundaries:(3 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W0M0) CG13890 protein [DrosMelano7227.FASTAC.txt]
  • (AE003469) CG13890 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG13890-PA [Drosophila melanogaster]gi|24654903|ref|NP_612065.1| CG13890-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF474 [fly-100309-contam.fasta]
  • CG13890-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG13890 OS=Drosophila melanogaster GN=CG13890 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423,FlyMine:FBpp0072484,modMine:FBpp0072484; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG13890 OS=Drosophila melanogaster GN=CG13890 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423,FlyMine:FBpp0072484,modMine:FBpp0072484; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423,FlyMine:FBpp0072484,modMine:FBpp0072484; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Uncharacterized protein OS=Drosophila melanogaster GN=CG13890 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0072484 type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423,FlyMine:FBpp0072484,modMine:FBpp0072484; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:join(851442..851714,851774..851893,851953..852348); ID=FBpp0072484; name=CG13890-PA; parent=FBgn0035169,FBtr0072587; dbxref=FlyBase:FBpp0072484,FlyBase_Annotation_IDs:CG13890-PA,GB_protein:AAF47423.1,REFSEQ:NP_612065,GB_protein:AAF47423,UniProt/TrEMBL:Q9W0M0,FlyMine:FBpp0072484,modMine:FBpp0072484; MD5=195e7328bf5513dfcca6cd8af1de4d6c; length=262; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 262 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    Biological Process: metabolic process [IEA]
    Molecular Function: dodecenoyl-CoA delta-isomerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYQGYKELL VEQQGKLLVA KFNNPKKKNC INRVAYQEMT RVLTEVNDDE GVTIVVFTGV  60
   61 GDIFTSGNDL SQSSNTDDID AFFKQSNATF KAMVLSFVNC RKIVLALVNG PAIGIGATIV 120
  121 GLCDVAWCSE TTYFYTPFTK LGLVPEGGSS YMLPLILGRS KASEILLLSE PLSAQEAYQF 180
  181 NFVSRIFKAS ELESVIWPKL RQYSELPTNS LLQGKRLVKD GFLENLIKAN EAECKQLLQQ 240
  241 FQHPEFAQAI IDFASRKNKA KL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..262] PSI-BLAST 51.221849 The crystal structure of human peroxisomal delta3, delta2 enoyl CoA isomerase (PECI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  4.25084649365698 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  3.92947460544831 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  3.59076614105466 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  3.4980371783229 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  3.34692152434862 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  1.97586838275054 bayes_pls_golite062009
  • dodecenoyl-CoA delta-isomerase activity
    		•  1.80820904754223 bayes_pls_golite062009
  • catalytic activity
    		•  1.46154163027498 bayes_pls_golite062009
  • 3-hydroxybutyryl-CoA epimerase activity
    		•  1.31614278936637 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.20853698666984 bayes_pls_golite062009
  • racemase and epimerase activity, acting on hydroxy acids and derivatives
    		•  1.08284170936757 bayes_pls_golite062009
  • long-chain-3-hydroxyacyl-CoA dehydrogenase activity
    		•  1.03484393216342 bayes_pls_golite062009
  • ligase activity
    		•  0.98581896521131 bayes_pls_golite062009
  • long-chain-enoyl-CoA hydratase activity
    		•  0.571617594666499 bayes_pls_golite062009
  • binding
    		•  0.222808057179506 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.61

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle