Protein Overview: CG13890-PA

General Information:
Name(s) found:	CG13890-PA / FBpp0072484 [FlyBase]
Description(s) found: Found 20 descriptions. SHOW ALL	This gene is referred to in FlyBase by the symbol Dmel\CG13890 (CG13890, FBgn0035169). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:851319..852673. It has the cytological map location 61D2. Based on sequence similarity, it is predicted to have molecular function</span>: dodecenoyl-CoA delta-isomerase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: metabolic process. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
Organism:	Drosophila melanogaster
Length:	262 amino acids
Gene Ontology:
Cellular Component:	lipid particle [IDA]
Biological Process:	metabolic process [IEA]
Molecular Function:	dodecenoyl-CoA delta-isomerase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYQGYKELL VEQQGKLLVA KFNNPKKKNC INRVAYQEMT RVLTEVNDDE GVTIVVFTGV  60
   61 GDIFTSGNDL SQSSNTDDID AFFKQSNATF KAMVLSFVNC RKIVLALVNG PAIGIGATIV 120
  121 GLCDVAWCSE TTYFYTPFTK LGLVPEGGSS YMLPLILGRS KASEILLLSE PLSAQEAYQF 180
  181 NFVSRIFKAS ELESVIWPKL RQYSELPTNS LLQGKRLVKD GFLENLIKAN EAECKQLLQQ 240
  241 FQHPEFAQAI IDFASRKNKA KL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
3-hydroxyacyl-CoA dehydrogenase activity	4.25084649365698	bayes_pls_golite062009
enoyl-CoA hydratase activity	3.92947460544831	bayes_pls_golite062009
CoA carboxylase activity	3.59076614105466	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	3.4980371783229	bayes_pls_golite062009
acetyl-CoA carboxylase activity	3.34692152434862	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	1.97586838275054	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	1.80820904754223	bayes_pls_golite062009
catalytic activity	1.46154163027498	bayes_pls_golite062009
3-hydroxybutyryl-CoA epimerase activity	1.31614278936637	bayes_pls_golite062009
propionyl-CoA carboxylase activity	1.20853698666984	bayes_pls_golite062009
racemase and epimerase activity, acting on hydroxy acids and derivatives	1.08284170936757	bayes_pls_golite062009
long-chain-3-hydroxyacyl-CoA dehydrogenase activity	1.03484393216342	bayes_pls_golite062009
ligase activity	0.98581896521131	bayes_pls_golite062009
long-chain-enoyl-CoA hydratase activity	0.571617594666499	bayes_pls_golite062009
binding	0.222808057179506	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.61

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..262]	PSI-BLAST	51.221849	The crystal structure of human peroxisomal delta3, delta2 enoyl CoA isomerase (PECI)

Protein Overview: CG13890-PA

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: