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Protein Overview: Vti1-PA

General Information:
Name(s) found: Vti1-PA / FBpp0072503 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\Vti1 (CG3279, FBgn0260862). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:691486..692915. It has the cytological map location 61C8. Based on sequence similarity, it is predicted to have molecular function</span>: SNAP receptor activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: vesicle-mediated transport. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 230 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [ISS]
    Biological Process: vesicle-mediated transport [ISS]
    intracellular protein transport [IEA]
    Molecular Function: SNAP receptor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLEQYEQQ YATLIAEITA HIGRLQQQNN NSERHDLCSK IDSSLPEAQE LLEQMGLEVR  60
   61 ELNPGLRSSF NGKLQVAQAE LKRLQAEYRL TKDKQRSQAN TFTTLDLGDS YEDVSISTDQ 120
  121 RQRLLDNSER IERTGNRLTE GYRVALETEQ LGAQVLNDLH HQRETLQGAR ARLRETNAEL 180
  181 GRASRTLNTM MLRALREKVV LYGVGVCFVV AVGVSLYLTF APSSSSTASS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 9.30103 Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
    2 View Details [107..230] PSI-BLAST 5.522879 No description for 2npsC was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphatidic acid binding
    		•  6.29287857316152 bayes_pls_golite062009
  • SNAP receptor activity
    		•  3.50393203740159 bayes_pls_golite062009
  • calcium channel inhibitor activity
    		•  2.99240433552966 bayes_pls_golite062009
  • arachidonic acid binding
    		•  2.43181217934756 bayes_pls_golite062009
  • protein transporter activity
    		•  2.305772311362 bayes_pls_golite062009
  • binding
    		•  2.18404492932496 bayes_pls_golite062009
  • SNARE binding
    		•  1.85060343142976 bayes_pls_golite062009
  • protein binding
    		•  1.82422117934251 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.00476738027966683 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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