| Protein: | Vti1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 230 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vti1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
168.0 | [0..2] | [220..177] |
|
|
141.0 | [0..4] | [220..5] |
|
|
139.0 | [0..2] | [220..3] |
|
|
139.0 | [0..2] | [178..415] |
|
|
137.0 | [0..2] | [195..12] |
|
|
137.0 | [0..3] | [218..490] |
|
|
134.0 | [0..2] | [221..82] |
|
|
134.0 | [0..1] | [230..1] |
|
|
133.0 | [0..1] | [229..1] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MSLLEQYEQQ YATLIAEITA HIGRLQQQNN NSERHDLCSK IDSSLPEAQE LLEQMGLEVR 60
61 ELNPGLRSSF NGKLQVAQAE LKRLQAEYRL TKDKQRSQAN TFTTLD
|
| Detection Method: |  |
| Confidence: | 9.30103 |
| Match: | 1vcsA |
| Description: | Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus] |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphatidic acid binding | 6.29287857316152 | bayes_pls_golite062009 |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| calcium channel inhibitor activity | 2.99240433552966 | bayes_pls_golite062009 |
| arachidonic acid binding | 2.43181217934756 | bayes_pls_golite062009 |
| protein transporter activity | 2.305772311362 | bayes_pls_golite062009 |
| binding | 2.18404492932496 | bayes_pls_golite062009 |
| SNARE binding | 1.85060343142976 | bayes_pls_golite062009 |
| protein binding | 1.82422117934251 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00476738027966683 | bayes_pls_golite062009 |
|
Region A: Residues: [107-230] |
1 11 21 31 41 51
| | | | | |
1 LGDSYEDVSI STDQRQRLLD NSERIERTGN RLTEGYRVAL ETEQLGAQVL NDLHHQRETL 60
61 QGARARLRET NAELGRASRT LNTMMLRALR EKVVLYGVGV CFVVAVGVSL YLTFAPSSSS 120
121 TASS
|
| Detection Method: | |
| Confidence: | 5.522879 |
| Match: | 2npsC |
| Description: | No description for 2npsC was found. |
