YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vti1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLEQYEQQ YATLIAEITA HIGRLQQQNN NSERHDLCSK IDSSLPEAQE LLEQMGLEVR  60
   61 ELNPGLRSSF NGKLQVAQAE LKRLQAEYRL TKDKQRSQAN TFTTLDLGDS YEDVSISTDQ 120
  121 RQRLLDNSER IERTGNRLTE GYRVALETEQ LGAQVLNDLH HQRETLQGAR ARLRETNAEL 180
  181 GRASRTLNTM MLRALREKVV LYGVGVCFVV AVGVSLYLTF APSSSSTASS

Type	Start	End	Confidence
Cytoplasmic	1	198	0.98
Transmembrane Helix	199	221	0.94
Non-Cytoplasmic	222	230	0.96