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Protein Overview: tamo-PA, tamo-PB...

General Information:
Name(s) found: FBpp0310082 [FlyBase]
tamo-PB / FBpp0072189 [FlyBase]
tamo-PA / FBpp0072188 [FlyBase]
Description(s) found:
Found 43 descriptions.
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  • type=protein; loc=2R:complement(20015336..20016136,20016203..20017471,20017537..20017736,20017799..20017922); ID=FBpp0310082; name=tamo-PC; parent=FBgn0041582,FBtr0343438; dbxref=FlyBase:FBpp0310082,FlyBase_Annotation_IDs:CG4057-PC; MD5=bc77d03403637e6caf413659b7830bde; length=797; release=r5.56; species=Dmel; [FlyBase]
  • The gene tamo is referred to in FlyBase by the symbol Dmel\tamo (CG4057, FBgn0041582). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20014161..20021074. It has the cytological map location 60B11. There is experimental evidence that it has the molecular function</span>: protein binding; Ran GTPase binding. There is experimental evidence that it is involved in the biological process</span>: multicellular organismal development; protein transport. 5 alleles are reported. The phenotypes of these alleles are annotated with: filzkorper; egg chamber; embryonic dorsal epidermis; denticle belt. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene tamo is referred to in FlyBase by the symbol Dmel\tamo (CG4057, FBgn0041582). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20014161..20021074. It has the cytological map location 60B11. There is experimental evidence that it has the molecular function</span>: protein binding; Ran GTPase binding. There is experimental evidence that it is involved in the biological process</span>: multicellular organismal development; protein transport. 5 alleles are reported. The phenotypes of these alleles are annotated with: filzkorper; egg chamber; embryonic dorsal epidermis; denticle belt. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 797 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: negative regulation of protein import into nucleus [NAS]
    multicellular organismal development [IDA]
    protein transport [IMP]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IPI]
    Ran GTPase binding [IPI]
    nuclear localization sequence binding [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFVPHDLI PDLWDEILRR HWMFLETEES IEKLEERKQL EGCLKEFLCV VQHDRKFFLP  60
   61 ETGHVLRRSV LELPDFSAQN AIVAFETISQ YANNLFTKPW RKEYRTLKTY SGCFQHDIQS 120
  121 RLLDAEQLFL AMGYRRAAED TFVLEGPICP DQVTNVSRDA MAAYVECQIM KHIYAGVTAA 180
  181 GYVCTWKDIL QFRERYVGGT STTIKEMVRQ LSEKRVRMEQ PPMQENTYSN VVSAAPTACG 240
  241 MRSNNVAHHP SSSGTCALHP NGLNEAGKYL PPYPAPPPQQ PHLPGPLMTH SRSLDHYQEP 300
  301 QAHLPHRHSF DQQLQQQCQL PHVYEAPYDC LDGLSMGSSA SYAAVTGAYN APGNRYPLPY 360
  361 NISSQLNAPY ASPADFYGNG QHTNMYATLG KTGPAHSCDL HRRQPNTSAA AAAALAAMQH 420
  421 RQSTYPPDHH LIDFDERAHL TQHDFGTHDY DPQYAELRGQ VQPSMRGNPV AMYATYGGYD 480
  481 LPTTLPQAPP PTGQDMYIYA RPVPKSSRMR ALAEAGGINS TDKHPRSAEK QSTMDNNRKM 540
  541 HKELKERNSR TAPAKRSGTE RDIPTTISDL NSYDSASLDG FVALDSSSSP PLMPKVQEGV 600
  601 GSFESWNYVF KNLERSGYTK DLGDREDLLV QSLDLGSLSI TNGGAAPPAE KRREATNPTN 660
  661 GEKARTLDKK SGTGRREAKV VQAPAPSPLP NSSSAGVKKV KSALKTAVVD NRGTGSRQRT 720
  721 GAVPKQPPNV SPQLIVTSPN EWSCSFCTFL NPDTKRICEM CCRSKDFNLE AASAASSSAA 780
  781 AAAASAASVS HASSTCV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..278] PSI-BLAST 38.39794 RBP1
    2 View Details [279..357] deduced N/A No confident structure predictions are available.
    3 View Details [358..523] PSI-BLAST 7.0 Sec24
    4 View Details [524..651] MSA 1.26799 View MSA. No confident structure predictions are available.
    5 View Details [652..797] FFAS03 1.46 ESCRT-II


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle