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Protein Overview: Nxt1-PA

General Information:
Name(s) found: Nxt1-PA / FBpp0072150 [FlyBase]
Description(s) found:
Found 25 descriptions.
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  • The gene NTF2-related export protein 1 is referred to in FlyBase by the symbol Dmel\Nxt1 (CG12752, FBgn0028411). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19698844..19699496. It has the cytological map location 60A2. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: poly(A)+ mRNA export from nucleus. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 133 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDA]
    nucleus [NAS]
    cytoplasm [IDA]
    nucleoplasm [IDA]
    Biological Process: mRNA export from nucleus [NAS]
    snRNA export from nucleus [NAS]
    tRNA export from nucleus [NAS]
    protein export from nucleus [NAS]
    poly(A)+ mRNA export from nucleus [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDLKAKVE SCARTADTFT RLYYASVDNR RQQIGRLYLD NATLSWNGNG AIGRQMIESY  60
   61 FQELPSSNHQ LNTLDAQPIV DQAVSNQLAY LIMASGSVKF ADQQLRKFQQ TFIVTAENDK 120
  121 WKVVSDCYRM QEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] PSI-BLAST 39.154902 NTF2-related export protein 1 (p15)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleocytoplasmic transporter activity
    		•  4.11811310168752 bayes_pls_golite062009
  • protein transporter activity
    		•  3.2858716221712 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  2.22367856601071 bayes_pls_golite062009
  • binding
    		•  2.08734227778958 bayes_pls_golite062009
  • RNA binding
    		•  1.98983420561953 bayes_pls_golite062009
  • transporter activity
    		•  1.80701285041353 bayes_pls_golite062009
  • mRNA binding
    		•  1.39091688795726 bayes_pls_golite062009
  • protein binding
    		•  1.36536670483288 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.33804818542017 bayes_pls_golite062009
  • structural constituent of nuclear pore
    		•  1.30758304562723 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.22102896992563 bayes_pls_golite062009
  • Ran GTPase binding
    		•  1.18290069522408 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.890150150408175 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven protein transmembrane transporter activity
    		•  0.87831089735211 bayes_pls_golite062009
  • macromolecule transmembrane transporter activity
    		•  0.87831089735211 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.446562877324676 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.439519001457896 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.430285640125175 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle