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Protein Overview: qkr58E-1-PA

General Information:
Name(s) found: qkr58E-1-PA / FBpp0071754 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene quaking related 58E-1 is referred to in FlyBase by the symbol Dmel\qkr58E-1 (CG3613, FBgn0022986). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:18300422..18303047. It has the cytological map location 58D8. It is reported to have molecular function</span>: mRNA binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 396 amino acids

    Gene Ontology:
    Cellular Component: catalytic step 2 spliceosome [IDA]
    precatalytic spliceosome [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [IC]
    Molecular Function: RNA binding [IEA]
    mRNA binding [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRDYDRDYN EDAADYKRKR RDEEPAATGA PETPEADGGG HTTSHAALRD TPQLNEKTNA  60
   61 YLQECLLEKK TLEKKHIITK RLLDDEVEKI LVSGRIPKPE IYANVYSEKP IRVAQKVLFP 120
  121 IKEYPKFNFV GKILGPKGNT LRQLQEETMC KMVVMGRNSM RDHGKEEELR SSGNPKYAHL 180
  181 SRDLHVEIST VAPPAEAYHR ISYALGEIRK FMIPDANDDI RLEQLREMDG KERMYKKSHH 240
  241 YSKSYGDHGA YSSRTPPPAS SKPKVYSILE KARYVMDDPN YGIVKTHRSR DHELYDHHGE 300
  301 YDRYATPPPQ TSKHSTHHAQ YDSSSYERDY RREYHPHSSS SSYAAAYPAK PSNGRSSSSY 360
  361 RPTTSGSGSH SSAHYETGSR SRESVRYRSA PYPKIR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..263] PSI-BLAST 46.522879 Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
    3 View Details [264..396] MSA 5.172993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle