YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RpS27A-PA

General Information:
Name(s) found: RpS27A-PA / FBpp0079606 [FlyBase]
Description(s) found:
Found 24 descriptions.
SHOW ALL
  • The gene Ribosomal protein S27A is referred to in FlyBase by the symbol Dmel\RpS27A (CG5271, FBgn0003942). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:10408351..10410467. It has the cytological map location 31E1. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome; protein binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ubiquitin-dependent protein catabolic process; translation; protein modification process. 6 alleles are reported. The phenotypes of these alleles are annotated with: macrochaeta; spermatid. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 156 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    cytoplasm [NAS]
    cytosolic small ribosomal subunit [ISS]
    ribosome [IEA][NAS]
    Biological Process: response to heat [IEP]
    phagocytosis, engulfment [IMP]
    epidermal growth factor receptor signaling pathway [ISS][NAS]
    protein modification process [ISS]
    regulation of transcription, DNA-dependent [NAS]
    ribosome biogenesis [NAS]
    chromatin organization [NAS]
    response to stress [NAS]
    cellular process [IMP]
    translation [IEA][ISS]
    ubiquitin-dependent protein catabolic process [ISS]
    Molecular Function: protein binding [ISS]
    structural constituent of ribosome [IEA][ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRGGAKKR KKKNYSTPKK IKHKRKKVKL AVLKYYKVDE NGKIHRLRRE 120
  121 CPGENCGAGV FMAAHEDRHY CGKCNLTFVF SKPEEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 37.0 No description for 2ojrA was found.
    2 View Details [94..156] MSA 9.100995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle