Protein Overview: santa-maria-PB

General Information:
Name(s) found:	santa-maria-PB / FBpp0079089 [FlyBase]
Description(s) found: SHOW ONLY BEST	gi\|22945866\|gb\|AAN10632.1\| scavenger receptor acting in neural tissue and majority of rhodopsin is absent, isoform B [Drosophila melanogaster] [NCBI NR] gi\|19920884\|ref\|NP_609121.1\| scavenger receptor acting in neural tissue and majority of rhodopsin is absent, isoform B [Drosophila melanogaster] [NCBI NR] gi\|15291475\|gb\|AAK93006.1\| GH23019p [Drosophila melanogaster] [NCBI NR] The gene scavenger receptor acting in neural tissue and majority of rhodopsin is absent is referred to in FlyBase by the symbol Dmel\santa-maria (CG12789, FBgn0025697). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:7445345..7451165. It has the cytological map location 28A1. Based on sequence similarity, it is predicted to have molecular function</span>: scavenger receptor activity. There is experimental evidence that it is involved in the biological process</span>: carotenoid metabolic process; phototransduction; rhodopsin biosynthetic process; autophagic cell death; salivary gland cell autophagic cell death. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase] >CG12789-PB translation from_gene[CG12789 BEST:CK01577 FBgn0025697] seq_release:3 mol_weight=59223 cds_boundaries:(2L:7,437,863..7,439,776[-]) aa_length:529 transcript_info:[CG12789-RB seq_release:3] gene_info:[gene symbol:BEST:CK01577 FBgn0025697 gene [hmr_yeast5_DM3-1_pombe.fasta] >CG12789-PA translation from_gene[CG12789 BEST:CK01577 FBgn0025697] seq_release:3 mol_weight=59223 cds_boundaries:(2L:7,437,863..7,439,776[-]) aa_length:529 transcript_info:[CG12789-RA seq_release:3] gene_info:[gene symbol:BEST:CK01577 FBgn0025697 gene [hmr_yeast5_DM3-1_pombe.fasta] (Q961H6) GH23019p (CG12789-PB) [DrosMelano7227.FASTAC.txt] CG12789-PB, isoform B [Drosophila melanogaster]gi\|15291475\|gb\|AAK93006.1\| GH23019p [Drosophila melanogaster]gi\|19920884\|ref\|NP_609121.1\| CG12789-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas] type=protein; loc=2L:complement(7445629..7446353,7446416..7446935,7446996..7447301,7447507..7447545); ID=FBpp0079089; name=santa-maria-PB; parent=FBgn0025697,FBtr0079465; dbxref=FlyBase:FBpp0079089,FlyBase_Annotation_IDs:CG12789-PB,GB_protein:AAN10632.1,R [fly-100309-contam.fasta] CG12789-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta] GH23019p [Drosophila melanogaster] [nr-271106-contam.fasta] type=protein; loc=2L:complement(7445629..7446353,7446416..7446935,7446996..7447301,7447507..7447545); ID=FBpp0079089; name=santa-maria-PB; parent=FBgn0025697,FBtr0079465; dbxref=FlyBase:FBpp0079089,FlyBase_Annotation_IDs:CG12789-PB,GB_protein:AAN10632.1,REFSEQ:NP_609121,GB_protein:AAN10632; MD5=b88088585f6ea6402ee5c75f92d32469; length=529; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=2L:complement(7445629..7446353,7446416..7446935,7446996..7447301,7447507..7447545); ID=FBpp0079089; name=santa-maria-PB; parent=FBgn0025697,FBtr0079465; dbxref=FlyBase:FBpp0079089,FlyBase_Annotation_IDs:CG12789-PB,GB_protein:AAN10632.1,REFSEQ:NP_609121,GB_protein:AAN10632; MD5=b88088585f6ea6402ee5c75f92d32469; length=529; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] GH23019p OS=Drosophila melanogaster GN=santa-maria PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta] GH23019p OS=Drosophila melanogaster GN=santa-maria PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
Organism:	Drosophila melanogaster
Length:	529 amino acids
Gene Ontology:
Cellular Component:	integral to plasma membrane [NAS] membrane [IEA]
Biological Process:	autophagic cell death [IEP] rhodopsin biosynthetic process [IMP] salivary gland cell autophagic cell death [IEP] cell adhesion [IEA] defense response [ISS][NAS] phototransduction [IMP] carotenoid metabolic process [IMP]
Molecular Function:	scavenger receptor activity [ISS][NAS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWVDLFDWI MHKEMALAPD TRVYENWKSP PIDLSLDIYL YNWTNPEDFG NLSTKPILEQ  60
   61 VGPYRFIERP DKVDIHWHPE NASVTYRRRS LFYFDAAGSN GSLDDEITTL NAVALSAAAT 120
  121 AKYWPPVKRS LVDVGLKMYG AEMSVQKSID ELLFTGYNDA MIDVAMAMPI FGDEVKVPFD 180
  181 KFGWFYTRNG SADLTGVFNV FTGADQLAKL GQMHSWNYQE NTGFFDSYCG MTNGSAGEFQ 240
  241 PQHLKPGDSV GLFTPDMCRT IPLDYVETVD IEGLEGYKFS GGPRSVDNGT QYPENLCFCG 300
  301 GQCVPSGVMN ISSCRFGSPV FMSYPHFFNA DPYYPDQVEG LSPNQKDHEF YMVVQPSTGI 360
  361 PLEVAARFQV NMLVEPIQGI SLYTGIPRIF FPLVWFEQKV RITPDMADQL KVLPIVMLSG 420
  421 HIFAGICLIV GITLLCWTPV QILLASCRNR RYDLRTKTKT NGQYKSRSQF SSAEELKSKA 480
  481 STLVCEKSVK GSPDSSPLLE KGRKPTIIKS QTGESVATAS TAISDNKQD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein Overview: santa-maria-PB

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: