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Protein Overview: Rtnl1-PC

General Information:
Name(s) found: Rtnl1-PC / FBpp0078679 [FlyBase]
Description(s) found:
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  • gi|7296923|gb|AAF52196.1| Rtnl1, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|28574670|ref|NP_787988.1| Rtnl1, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|255683457|gb|ACU27357.1| RE38157p [Drosophila melanogaster] [NCBI NR]
  • The gene Rtnl1 is referred to in FlyBase by the symbol Dmel\Rtnl1 (CG33113, FBgn0053113). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:4993641..5009744. It has the cytological map location 25B9-25C1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: inter-male aggressive behavior; olfactory behavior. 26 alleles are reported. No phenotypic data is available. It has 11 annotated transcripts and 11 annotated polypeptides. [FlyBase]
  • >CG33113-PC translation from_gene[CG33113 CG33113 FBgn0053113] seq_release:3 mol_weight=22616 cds_boundaries:(2L:4,986,782..4,987,962[-]) aa_length:202 transcript_info:[CG33113-RC seq_release:3] gene_info:[gene symbol:CG33113 synonyms:[CG8895 CG18623] [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VMW2) CG8895 protein [DrosMelano7227.FASTAC.txt]
  • (AE003608) CG8895 gene product [alt 2] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG33113-PC, isoform C [Drosophila melanogaster]gi|28574670|ref|NP_787988.1| CG33113-PC [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,4995376..4995391); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:A [fly-100309-contam.fasta]
  • CG33113-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Rtnl1 CG33113-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,4995376..4995391); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,4995376..4995391); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • RE38157p OS=Drosophila melanogaster GN=Rtnl1 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,4995376..4995391); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196,FlyMine:FBpp0078679,modMine:FBpp0078679; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(join(4995376..4995391,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196,FlyMine:FBpp0078679,modMine:FBpp0078679; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(4995376..4995391,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196,FlyMine:FBpp0078679,modMine:FBpp0078679; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of E1JHT6, Reticulon-like protein OS=Drosophila melanogaster GN=Rtnl1 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0078679 type=protein; loc=2L:complement(join(4995376..4995391,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196,FlyMine:FBpp0078679,modMine:FBpp0078679; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(4995376..4995391,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078679; name=Rtnl1-PC; parent=FBgn0053113,FBtr0079043; dbxref=FlyBase:FBpp0078679,FlyBase_Annotation_IDs:CG33113-PC,GB_protein:AAF52196.1,REFSEQ:NP_787988,GB_protein:AAF52196,UniProt/TrEMBL:Q9VMW2,FlyMine:FBpp0078679,modMine:FBpp0078679; MD5=97274f13dcbe6ce5dd658649d9a37cac; length=202; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 202 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytoplasm [IDA]
    endoplasmic reticulum [IEA]
    Biological Process: olfactory behavior [IMP]
    inter-male aggressive behavior [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRLLESLI YWRDVKKSGI VFGAGLITLA AISSFSVISV FAYLSLLTLF GTVAFRIYKS  60
   61 VTQAVQKTNE GHPFKDYLEL DLTLSHEKVQ NIAGVAVAHI NGFISELRRL FLVEDIIDSI 120
  121 KFGVILWVFT YVGAWFNGMT LVILAFVSLF TLPKVYENNK QSIDTHLDLV RSKLTEITDK 180
  181 IRVAIPIGNK KPEAAAESEK DK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 14.09691 No description for 2g31A was found.
    2 View Details [115..202] MSA 4.114996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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