YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rtnl1-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRLLESLI YWRDVKKSGI VFGAGLITLA AISSFSVISV FAYLSLLTLF GTVAFRIYKS  60
   61 VTQAVQKTNE GHPFKDYLEL DLTLSHEKVQ NIAGVAVAHI NGFISELRRL FLVEDIIDSI 120
  121 KFGVILWVFT YVGAWFNGMT LVILAFVSLF TLPKVYENNK QSIDTHLDLV RSKLTEITDK 180
  181 IRVAIPIGNK KPEAAAESEK DK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	44	0.92
Non-Cytoplasmic	45	130	0.82
Transmembrane Helix	131	152	0.87
Cytoplasmic	153	202	0.77